WinPCA. A package for windowed principal component analysis.
☆54Jun 9, 2026Updated 4 months ago
Alternatives and similar repositories for winpca
Users that are interested in winpca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- ☆21Dec 13, 2024Updated last year
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- Graph Variant Benchmarking for the HPRC2☆11May 26, 2026Updated 5 months ago
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- A "dot"-plot style viewer for .1aln files☆11Mar 17, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆45Dec 29, 2025Updated 10 months ago
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated 2 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆62Oct 23, 2026Updated last week
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago
- Pipelines for using T2T genome as a reference☆15Dec 11, 2024Updated last year
- ☆10Oct 16, 2026Updated 2 weeks ago
- ☆60Jun 12, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated 2 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- implicit pangenome graph☆114Updated this week
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 6 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆170Sep 19, 2026Updated last month
- ☆205Oct 5, 2026Updated 3 weeks ago
- OpenGL Powered Pretext Contact Map Viewer☆63Oct 22, 2026Updated last week
- Whole genome visualization and comparative genomics in R☆25Feb 18, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆12Updated this week
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Oct 21, 2026Updated last week
- Pangenome-based genome inference☆184Updated this week
- ☆19Aug 6, 2025Updated last year
- ☆12Jun 7, 2024Updated 2 years ago
- ☆13Sep 11, 2025Updated last year