MoritzBlumer / winpcaLinks
WinPCA. A package for windowed principal component analysis.
☆44Updated last month
Alternatives and similar repositories for winpca
Users that are interested in winpca are comparing it to the libraries listed below
Sorting:
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- ☆32Updated this week
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- Statistics and analysis for variation graphs☆47Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆55Updated 7 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- ☆21Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last month
- ☆38Updated 3 months ago
- convert PAF format to CHAIN format☆34Updated 8 months ago
- ☆32Updated last year
- Domain based annotation of transposable elements☆21Updated 3 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- ☆29Updated last week
- Software package for estimating fine-scale recombination rate.☆17Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- A genome assembly assessment pipeline.☆38Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆27Updated 2 weeks ago
- Multi-genome synteny block visualization tool☆52Updated last week
- Ploidy agnostic phasing pipeline and algorithm☆48Updated 2 years ago