Alternatives and similar repositories for North_American_Vitis_Pangenome:

Users that are interested in North_American_Vitis_Pangenome are comparing it to the libraries listed below

• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆20Updated last year
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• rebeccaserramari / polyploid-potato-assembly
  Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…
  ☆14Updated last year
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• tangerzhang / calc_switchErr
  ☆25Updated 3 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆23Updated this week
• GaoLei-bio / SV
  ☆14Updated 2 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆11Updated 10 months ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated last year
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆16Updated 2 weeks ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆20Updated 4 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆20Updated 4 years ago
• SwallowGenomics / BarnSwallow
  ☆13Updated last year
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 2 months ago
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆17Updated 7 months ago
• linguoliang / puzzle-hi-c
  ☆15Updated last month
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆15Updated last week
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 3 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆20Updated 8 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆37Updated last year