noecochetel / North_American_Vitis_PangenomeLinks
Construct and Analyze the North American Vitis pangenome
☆25Updated 2 months ago
Alternatives and similar repositories for North_American_Vitis_Pangenome
Users that are interested in North_American_Vitis_Pangenome are comparing it to the libraries listed below
Sorting:
- SINE annotation tool for plant genomes☆18Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆24Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated last month
- B73Ab10 genome assembly methods☆17Updated 3 years ago
- ☆10Updated last year
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- plot genome alignment synteny☆21Updated 5 years ago
- ☆28Updated 6 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 4 months ago
- ☆17Updated 10 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 6 months ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated this week
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 4 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 months ago
- ☆29Updated 2 years ago
- issues for semina "Data Visulization"☆13Updated 4 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Updated 6 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated last month
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago