noecochetel / North_American_Vitis_PangenomeLinks
Construct and Analyze the North American Vitis pangenome
☆23Updated last year
Alternatives and similar repositories for North_American_Vitis_Pangenome
Users that are interested in North_American_Vitis_Pangenome are comparing it to the libraries listed below
Sorting:
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- ☆25Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- ☆27Updated 2 months ago
- ☆21Updated 10 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- ☆22Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- ☆16Updated 6 months ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- ☆16Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated 7 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- SINE annotation tool for plant genomes☆17Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆11Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Draw a dot plot from a paf alignment☆30Updated 2 months ago
- ☆10Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- ☆15Updated 3 years ago
- ☆20Updated last week
- ☆16Updated 2 years ago