Construct and Analyze the North American Vitis pangenome
☆29Aug 19, 2025Updated 8 months ago
Alternatives and similar repositories for North_American_Vitis_Pangenome
Users that are interested in North_American_Vitis_Pangenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆11Mar 14, 2026Updated last month
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆44May 8, 2024Updated 2 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 6 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 4 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 10 months ago
- ☆11Sep 4, 2024Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- Application of pan-genome for population☆117Oct 26, 2025Updated 6 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆92Jan 14, 2025Updated last year
- ☆28Oct 20, 2023Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- High-precision TE Annotator☆155Dec 4, 2025Updated 5 months ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆31Apr 15, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆69Oct 23, 2025Updated 6 months ago
- ☆11Sep 1, 2022Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- tomato graph pangenome☆91Dec 13, 2022Updated 3 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- ☆10Jan 27, 2025Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆30Feb 23, 2026Updated 2 months ago
- ☆31Apr 7, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10May 2, 2026Updated last week
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- The IntroBlocker ancestry inference algorithm☆17Oct 24, 2023Updated 2 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 11 months ago
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated 2 weeks ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago