Alternatives and similar repositories for North_American_Vitis_Pangenome

Users that are interested in North_American_Vitis_Pangenome are comparing it to the libraries listed below

• Minglc / CisTrans-ECAS
  ☆10Updated last year
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated last year
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated last year
• yilinZhang-bio / Watermelon-pangenome
  ☆24Updated 2 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆14Updated last year
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 6 months ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆25Updated 2 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• tangerzhang / calc_switchErr
  ☆30Updated 8 months ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆23Updated last year
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated last month
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for T2T assembly, and it is under development.
  ☆15Updated 2 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆20Updated 5 years ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• yiliao1022 / SVGAP
  A pipeline for genomic variant detection with genome assemblies at population scale
  ☆33Updated 6 months ago
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆17Updated 2 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 months ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 4 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆17Updated 3 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆23Updated 5 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆16Updated 5 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated 11 months ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆14Updated 5 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 3 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago