Alternatives and similar repositories for North_American_Vitis_Pangenome

Users that are interested in North_American_Vitis_Pangenome are comparing it to the libraries listed below

• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 2 months ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated this week
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆9Updated last year
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆13Updated last year
• comery / gVisualization
  issues for semina "Data Visulization"
  ☆13Updated last week
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• yilinZhang-bio / Watermelon-pangenome
  ☆22Updated last year
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 4 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 10 months ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆9Updated 3 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 3 months ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 8 months ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated 5 months ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• thamala / PBScan
  Selection outlier scan with population branch statistic
  ☆13Updated last year