Construct and Analyze the North American Vitis pangenome
☆29Aug 19, 2025Updated 7 months ago
Alternatives and similar repositories for North_American_Vitis_Pangenome
Users that are interested in North_American_Vitis_Pangenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆11Mar 14, 2026Updated 2 weeks ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆44May 8, 2024Updated last year
- ☆16Mar 17, 2023Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- ☆11Sep 4, 2024Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- Application of pan-genome for population☆116Oct 26, 2025Updated 5 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆91Jan 14, 2025Updated last year
- ☆28Oct 20, 2023Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- High-precision TE Annotator☆151Dec 4, 2025Updated 3 months ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Mar 20, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆33Jan 3, 2022Updated 4 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆68Oct 23, 2025Updated 5 months ago
- ☆11Sep 1, 2022Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- tomato graph pangenome☆88Dec 13, 2022Updated 3 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- ☆10Jan 27, 2025Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated last month
- ☆31Apr 7, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 2 months ago
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- Phased structural variant discovery in pangenomes☆40Mar 14, 2026Updated 2 weeks ago
- The IntroBlocker ancestry inference algorithm☆17Oct 24, 2023Updated 2 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 10 months ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆34Nov 14, 2024Updated last year