☆36Jan 14, 2024Updated 2 years ago
Alternatives and similar repositories for SVhawkeye
Users that are interested in SVhawkeye are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Repository☆10Oct 23, 2024Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- ☆35Aug 18, 2024Updated last year
- A tool for somatic structural variant calling using long reads☆169Apr 9, 2026Updated 3 weeks ago
- ☆18Jan 29, 2025Updated last year
- implicit pangenome graph☆101Updated this week
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 4 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Pangenome Mutation-Annotated Networks☆41Apr 9, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Better Alignments with Translated HMMER☆25Apr 8, 2026Updated 3 weeks ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 8 months ago
- ☆21Dec 13, 2024Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆16Sep 5, 2024Updated last year
- ☆10Jan 18, 2023Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13May 2, 2025Updated 11 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- ☆14Mar 1, 2026Updated last month
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated last month
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Apr 9, 2026Updated 3 weeks ago