yywan0913 / SVhawkeyeLinks
☆31Updated last year
Alternatives and similar repositories for SVhawkeye
Users that are interested in SVhawkeye are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- ☆30Updated 10 months ago
- Detection and genotyping of structural variants☆18Updated 2 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Tumor-normal variant calling workflow using HiFi reads☆20Updated last month
- A battery of methylation tools for PacBio HiFi reads☆36Updated 3 weeks ago
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago
- ☆48Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆67Updated last week
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- Structural variant merging tool☆52Updated 10 months ago
- python plotly Circos from VCF☆38Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- ☆22Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- new repo☆28Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data