WDL’s and Dockerfiles for assembly QC process
☆72Jul 26, 2025Updated 8 months ago
Alternatives and similar repositories for hpp_production_workflows
Users that are interested in hpp_production_workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆127Oct 18, 2023Updated 2 years ago
- ☆61Jun 14, 2021Updated 4 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- Assemblies from HPP Year 1 production☆80May 9, 2023Updated 2 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- ☆38Oct 6, 2025Updated 5 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆107Jul 23, 2024Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Pangenome-based genome inference☆163Dec 1, 2025Updated 3 months ago
- implicit pangenome graph☆98Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated 2 weeks ago
- ☆21Mar 11, 2026Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆247Dec 16, 2025Updated 3 months ago
- ☆286Dec 29, 2025Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆165Jul 4, 2025Updated 8 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- ☆10Mar 4, 2025Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- ☆20Nov 30, 2023Updated 2 years ago
- ☆13Mar 1, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Find, circularise and annotate mitogenome from PacBio assemblies☆192May 11, 2025Updated 10 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- ☆20Apr 15, 2024Updated last year
- Application of pan-genome for population☆116Oct 26, 2025Updated 5 months ago
- GBWT-based handle graph☆31Mar 17, 2026Updated last week