Alternatives and similar repositories for hpp_production_workflows

Users that are interested in hpp_production_workflows are comparing it to the libraries listed below

• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆56Updated 3 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆109Updated last month
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• human-pangenomics / HG002_Data_Freeze_v1.0
  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
  ☆79Updated 2 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆115Updated 3 weeks ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆102Updated this week
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated last month
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated 2 weeks ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆115Updated 5 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated 3 weeks ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆34Updated last week
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆55Updated 2 years ago
• human-pangenomics / hpp_pangenome_resources
  ☆111Updated last year
• epi2me-labs / modbam2bed
  ☆46Updated 8 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated 2 weeks ago
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆40Updated last week
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 4 months ago
• mcfrith / last-genome-alignments
  ☆61Updated last year
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆140Updated 3 weeks ago
• kjenike / panagram
  ☆61Updated last month
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated 2 weeks ago
• human-pangenomics / HPP_Year1_Assemblies
  Assemblies from HPP Year 1 production
  ☆73Updated 2 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆79Updated last year
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago