Alternatives and similar repositories for FamDB

Users that are interested in FamDB are comparing it to the libraries listed below

• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last week
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆47Updated last month
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆59Updated 4 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 2 months ago
• marbl / Primates
  Complete assemblies of non-human primate genomes
  ☆56Updated 8 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆54Updated 10 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆57Updated this week
• PacificBiosciences / HiFi-somatic-WDL
  Tumor-normal variant calling workflow using HiFi reads
  ☆26Updated last month
• farhangus / Sniffles2_plot
  ☆32Updated last year
• agshumate / LiftoffTools
  ☆29Updated 2 years ago
• MariaNattestad / dot
  Dot: An interactive dot plot viewer for comparative genomics
  ☆35Updated 2 years ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆30Updated last week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated last week
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆45Updated 6 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• mrvollger / NucFreq
  ☆38Updated 3 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 4 years ago
• hitbc / gcSV
  ☆21Updated 2 weeks ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 4 years ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆52Updated 10 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• nanoporetech / isONclust2
  A tool for de novo clustering of long transcriptomic reads
  ☆15Updated 3 years ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆29Updated 5 months ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆86Updated this week
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆49Updated 2 months ago