Dfam-consortium / FamDB
FamDB file format library and utilities
☆25Updated last month
Alternatives and similar repositories for FamDB:
Users that are interested in FamDB are comparing it to the libraries listed below
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 6 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆21Updated 3 weeks ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 2 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 4 months ago
- ☆39Updated 2 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆26Updated this week
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆18Updated last month
- MCHelper: An automatic tool to curate transposable element libraries☆37Updated 3 weeks ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- ☆17Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ☆30Updated 8 months ago
- ☆18Updated 2 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Consensus genome annotation using OMA☆23Updated this week
- ☆20Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆16Updated last year
- ☆28Updated 2 years ago