Dfam-consortium / FamDBView external linksLinks
FamDB file format library and utilities
☆37Aug 27, 2025Updated 5 months ago
Alternatives and similar repositories for FamDB
Users that are interested in FamDB are comparing it to the libraries listed below
Sorting:
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Jul 23, 2024Updated last year
- A tool for evaluating long-read de novo assembly results☆52Aug 25, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆229Feb 7, 2026Updated last week
- ☆13Nov 15, 2017Updated 8 years ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆159Jul 4, 2025Updated 7 months ago
- ☆29Feb 5, 2026Updated last week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Jan 3, 2022Updated 4 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26May 18, 2024Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Jan 29, 2026Updated 2 weeks ago
- ☆17Mar 2, 2024Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 9 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆146Jul 7, 2025Updated 7 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 7 months ago
- ☆17Jan 20, 2026Updated 3 weeks ago
- Evaluating genome assemblies☆114Jan 11, 2026Updated last month
- Minimizer-based assembly scaffolding and mapping using long reads☆46Feb 4, 2026Updated last week
- A genome completeness evaluation tool based on miniprot☆233Sep 18, 2025Updated 4 months ago
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated last year
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆28Jun 17, 2025Updated 7 months ago
- ☆38Oct 6, 2025Updated 4 months ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 4 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Mar 11, 2019Updated 6 years ago
- ☆49Nov 24, 2025Updated 2 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Mar 5, 2025Updated 11 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆175Apr 12, 2023Updated 2 years ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 4 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago