FamDB file format library and utilities
☆41May 22, 2026Updated last week
Alternatives and similar repositories for FamDB
Users that are interested in FamDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆110Jul 23, 2024Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- A tool for evaluating long-read de novo assembly results☆53Aug 25, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆256May 20, 2026Updated last week
- ☆32Mar 3, 2026Updated 2 months ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 5 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Resources for phage genomics and annotation☆10Oct 27, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 11 months ago
- ☆17Mar 2, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆183Apr 12, 2023Updated 3 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆52Apr 1, 2026Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆64Updated this week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆301Apr 2, 2026Updated last month
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆41Oct 6, 2025Updated 7 months ago
- WDL’s and Dockerfiles for assembly QC process☆72Apr 28, 2026Updated last month
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆29Jun 17, 2025Updated 11 months ago
- haplotypic duplication identification tool☆286Oct 30, 2025Updated 6 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆154May 21, 2026Updated last week
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆19Oct 6, 2025Updated 7 months ago