FamDB file format library and utilities
☆46Jun 1, 2026Updated last month
Alternatives and similar repositories for FamDB
Users that are interested in FamDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆112Jul 23, 2024Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆179Jul 21, 2026Updated last week
- A tool for evaluating long-read de novo assembly results☆54Aug 25, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆268Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 2 months ago
- ☆32Mar 3, 2026Updated 4 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PECAT, a phased error correct and assembly tool☆67Dec 8, 2025Updated 7 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆185Apr 12, 2023Updated 3 years ago
- Evaluating genome assemblies☆123Mar 3, 2026Updated 4 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- FastOMA is a scalable software package to infer orthology relationship.☆99Updated this week
- Minimizer-based assembly scaffolding and mapping using long reads☆53Apr 1, 2026Updated 3 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆312Jun 4, 2026Updated last month
- WDL’s and Dockerfiles for assembly QC process☆73Jun 12, 2026Updated last month
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- ☆42Oct 6, 2025Updated 9 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆160Jun 26, 2026Updated last month
- haplotypic duplication identification tool☆292Oct 30, 2025Updated 8 months ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆30Jun 17, 2025Updated last year
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆19Oct 6, 2025Updated 9 months ago