maxrossi91 / moni
MONI: A Pangenomic Index for Finding MEMs
☆37Updated last month
Alternatives and similar repositories for moni:
Users that are interested in moni are comparing it to the libraries listed below
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated last week
- ☆17Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 11 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Differential k-mer analysis☆36Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆79Updated 2 weeks ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated last month
- ☆28Updated 7 months ago
- ☆28Updated 3 weeks ago
- Pan-Genomic Matching Statistics☆52Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 3 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated 2 weeks ago
- Index kmtricks bf matrices☆43Updated 5 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- 1-code framework: docs, C-library, and tools☆16Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆50Updated 3 weeks ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 weeks ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 5 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆63Updated 10 months ago
- Statistics and analysis for variation graphs☆39Updated 4 months ago