maxrossi91 / moniLinks
MONI: A Pangenomic Index for Finding MEMs
☆37Updated 7 months ago
Alternatives and similar repositories for moni
Users that are interested in moni are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- ☆28Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆68Updated 2 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated 3 weeks ago
- ☆17Updated 4 years ago
- Differential k-mer analysis☆37Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- ☆16Updated 2 years ago
- ☆18Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated last year
- ☆45Updated 2 weeks ago
- Fast and exact gap-affine partial order alignment☆56Updated 2 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago
- ☆28Updated 6 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- General purpose utility related to GAF files☆29Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated this week