pdishuck / GAVISUNKLinks
Genome Assembly Validation via Inter-SUNK distances in ONT reads
☆15Updated 2 years ago
Alternatives and similar repositories for GAVISUNK
Users that are interested in GAVISUNK are comparing it to the libraries listed below
Sorting:
- Phasing reads with secondary alignments☆21Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆24Updated last week
- Extracting paths from assembly graphs☆24Updated last year
- ☆30Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- Genome Assembly 102☆17Updated 8 months ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- ☆16Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- ☆28Updated 4 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- Prefix-renaming FASTA records really fast.☆17Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- parallelLastz: Running Lastz in parallel☆17Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 3 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆12Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 8 months ago
- ☆19Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆29Updated last month
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year