pdishuck / GAVISUNKLinks
Genome Assembly Validation via Inter-SUNK distances in ONT reads
☆15Updated 2 years ago
Alternatives and similar repositories for GAVISUNK
Users that are interested in GAVISUNK are comparing it to the libraries listed below
Sorting:
- Extracting paths from assembly graphs☆24Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated last week
- Phasing reads with secondary alignments☆20Updated 10 months ago
- ☆25Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- ☆28Updated last year
- Genome Assembly 102☆14Updated 5 months ago
- TD2☆18Updated 4 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 5 months ago
- SINE annotation tool for plant genomes☆18Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 9 months ago
- Tandem repeat genotyping with long reads☆30Updated 2 weeks ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Prefix-renaming FASTA records really fast.☆16Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Domain based annotation of transposable elements☆20Updated this week
- The MafFilter genome alignment processor☆19Updated 4 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- plot genome alignment synteny☆21Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago