Alternatives and similar repositories for ape_pangenome

Users that are interested in ape_pangenome are comparing it to the libraries listed below

• marbl / training
  Genome Assembly 102
  ☆15Updated 4 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆26Updated last month
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated last month
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆15Updated 2 years ago
• AndreaGuarracino / 1000G-ONT-F100-PGGB
  PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
  ☆12Updated 5 months ago
• MoinSebi / gfa2bin
  ☆25Updated last month
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆11Updated 7 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 3 months ago
• chfi / pafview
  ☆17Updated 7 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆20Updated 9 months ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 3 months ago
• davidebolo1993 / cosigt
  ☆21Updated this week
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated this week
• chfi / gfainject
  ☆17Updated 2 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated this week
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆16Updated last month
• marschall-lab / strand-seq-graph-phasing
  ☆12Updated 3 months ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 2 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆26Updated last year
• Adamtaranto / TIRmite
  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  ☆10Updated last month
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last week
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 4 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• human-pangenomics / hprc-tutorials
  ☆17Updated last year