janky-yz / SERVELinks
A developed pipeline for expressed endogenous retrovirus identification.
☆15Updated 11 months ago
Alternatives and similar repositories for SERVE
Users that are interested in SERVE are comparing it to the libraries listed below
Sorting:
- ☆37Updated 6 years ago
- ☆27Updated 3 years ago
- ☆37Updated 2 years ago
- ☆19Updated last year
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- an efficient Hi-C data processing pipeline☆17Updated last year
- R package to detect splicing QTLs (sQTLs)☆13Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Extract Sequence from Genome According to Annotation File☆37Updated 5 months ago
- Comprehensive analysis of small RNA sequencing data☆33Updated 4 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- ☆21Updated 6 months ago
- ☆22Updated 2 years ago
- bioinformatic pipeline for GLORI☆20Updated last year
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated this week
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Long read to rMATS☆32Updated 2 years ago
- ☆16Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 6 months ago
- ☆21Updated 5 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆15Updated this week
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- ☆15Updated 2 years ago