marbl / T2T-BrowserLinks
Genome browser hub for the T2T genomes and resources
☆23Updated 3 weeks ago
Alternatives and similar repositories for T2T-Browser
Users that are interested in T2T-Browser are comparing it to the libraries listed below
Sorting:
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- ☆42Updated 2 weeks ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆31Updated 3 weeks ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 8 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 weeks ago
- ☆21Updated 4 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆20Updated 4 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Population-wide Deletion Calling☆35Updated 3 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- PGR-TK: Pangenome Research Tool Kit☆14Updated 4 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 5 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- ☆17Updated last year
- Structural variant (SV) analysis tools☆36Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- VNTR annotation using motif selection☆35Updated last month
- ☆20Updated last year
- Easy genomic regions for short-read variant calling☆30Updated this week
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week
- ☆16Updated 6 months ago
- Phasing reads with secondary alignments☆19Updated 7 months ago