Alternatives and similar repositories for paf2chain:

Users that are interested in paf2chain are comparing it to the libraries listed below

• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆38Updated 6 months ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆57Updated this week
• mrvollger / NucFreq
  ☆35Updated last year
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆49Updated last week
• ChaissonLab / TT-Mars
  Structural Variants Assessment Based on Haplotype-resolved Assemblies
  ☆21Updated last year
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• delehef / asgart
  A genome-scale, fast, and precise segmental duplications mapping tool
  ☆33Updated 7 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 10 months ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆36Updated 2 weeks ago
• HudsonAlpha / fmlrc2
  ☆46Updated 2 years ago
• maickrau / MBG
  ☆62Updated last month
• bcgsc / xmatchview
  🗻 Visualization of genome/gene sequence synteny
  ☆38Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 2 months ago
• wdecoster / phasius
  ☆14Updated last month
• pangenome / pgge
  the pangenome graph evaluator
  ☆26Updated 4 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 3 years ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆23Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• rhysf / Diamond2GO
  ☆20Updated 8 months ago
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆22Updated 3 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 8 months ago
• ShunOuchi / GreenHill
  De novo chromosome-level scaffolding and phasing tool using Hi-C
  ☆27Updated last month
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆37Updated 6 months ago
• VGP / vgp-tools
  ☆28Updated 2 weeks ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated 7 months ago