AndreaGuarracino / paf2chainLinks
convert PAF format to CHAIN format
☆30Updated last month
Alternatives and similar repositories for paf2chain
Users that are interested in paf2chain are comparing it to the libraries listed below
Sorting:
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated last month
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- ☆35Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 8 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- SV calling for diploid assemblies☆27Updated last year
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated 3 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 weeks ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Ploidy agnostic phasing pipeline and algorithm☆45Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 8 months ago
- the pangenome graph evaluator☆27Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 6 months ago
- ☆28Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆17Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- SV genotyping with long reads☆39Updated last year
- Convert HAL to VG☆22Updated 10 months ago