convert PAF format to CHAIN format
☆36May 14, 2025Updated last year
Alternatives and similar repositories for paf2chain
Users that are interested in paf2chain are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- ☆32Jun 18, 2026Updated 3 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 3 months ago
- ☆11Feb 20, 2024Updated 2 years ago
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- bioinformatics toolkit in rust☆109Aug 16, 2026Updated last month
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 10 months ago
- ☆18Jan 29, 2025Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated last year
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 10 months ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- implicit pangenome graph☆114Sep 26, 2026Updated last week
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 10 months ago
- Variant Calling for the HPRC2☆19May 26, 2026Updated 4 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated 2 months ago
- ☆32Aug 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Dec 9, 2022Updated 3 years ago
- ☆31Aug 18, 2026Updated last month
- A multiscale pangenome browser☆36Jul 18, 2026Updated 2 months ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- ☆19May 10, 2023Updated 3 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 7 months ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 8 months ago
- ☆15May 3, 2023Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- ☆31Mar 27, 2024Updated 2 years ago