AndreaGuarracino / paf2chainLinks
convert PAF format to CHAIN format
☆34Updated 7 months ago
Alternatives and similar repositories for paf2chain
Users that are interested in paf2chain are comparing it to the libraries listed below
Sorting:
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- ☆38Updated 2 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- Statistics and analysis for variation graphs☆47Updated last year
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- ☆31Updated 6 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Computational Pangenomics☆17Updated 3 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Differential k-mer analysis☆39Updated last year
- ☆31Updated 7 months ago
- FastK based version of Merqury☆30Updated 3 months ago
- Convert HAL to VG☆23Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated 3 weeks ago
- the pangenome graph evaluator☆29Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- SV calling for diploid assemblies☆30Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆21Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated 2 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago