Generate random test data for bioinformatics
☆27Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for biotest
Users that are interested in biotest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jun 29, 2021Updated 5 years ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated last year
- ☆14Oct 14, 2020Updated 5 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- Generate beautiful API documentation for Nextflow pipelines☆18Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Randomly subsample sequencing reads or alignments☆271Updated this week
- ☆11Dec 9, 2022Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Updated this week
- Grep for FASTQ files☆104Jul 9, 2026Updated last month
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 10 months ago
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- ☆50Jul 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated 3 weeks ago
- ☆31Mar 27, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- ☆16Jun 22, 2023Updated 3 years ago
- ☆21Dec 26, 2025Updated 7 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 6 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Spiritual successor to picard for sequencing qc☆59Jul 19, 2026Updated 3 weeks ago
- ☆19May 10, 2023Updated 3 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆79Aug 2, 2022Updated 4 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year