natir / biotestLinks
Generate random test data for bioinformatics
☆26Updated last year
Alternatives and similar repositories for biotest
Users that are interested in biotest are comparing it to the libraries listed below
Sorting:
- Fast and exact gap-affine partial order alignment☆56Updated this week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- gia: Genomic Interval Arithmetic☆64Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- implicit pangenome graph☆79Updated this week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated 2 weeks ago
- Remove human reads from a sequencing run☆40Updated last week
- A Nextflow pipeline for genome and pan-genome annotation☆15Updated 2 weeks ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- ☆21Updated 10 months ago
- Extracts subgraphs or components from a graph in GFA format☆25Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated this week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 11 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆38Updated 3 weeks ago
- ☆45Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- A long read simulator based on badread idea☆22Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- k-mers and the like☆22Updated 3 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Differential k-mer analysis☆37Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- ☆17Updated 9 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated last week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year