natir / biotestLinks
Generate random test data for bioinformatics
☆26Updated last year
Alternatives and similar repositories for biotest
Users that are interested in biotest are comparing it to the libraries listed below
Sorting:
- Fast and exact gap-affine partial order alignment☆54Updated this week
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 3 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 10 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Updated 2 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated last month
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆37Updated this week
- ☆45Updated last month
- implicit pangenome graph☆69Updated last week
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- ☆17Updated 7 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- convert PAF format to CHAIN format☆32Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated last year
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- ☆21Updated 8 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago