ChaissonLab / danbing-tkLinks
Toolkit for VNTR genotyping and repeat-pan genome graph construction
☆29Updated last month
Alternatives and similar repositories for danbing-tk
Users that are interested in danbing-tk are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Gene copy number prediction from k-mer frequencies☆13Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆11Updated 4 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- ☆10Updated 5 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 2 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆21Updated 7 months ago
- ☆16Updated 3 years ago
- Genome Assembly 102☆14Updated 5 months ago
- ☆14Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Tandem repeat genotyping with long reads☆30Updated 2 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- ☆14Updated 2 years ago
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Benchmark structural variant calls against a reference set☆17Updated 11 months ago
- Convert HAL to VG☆22Updated last year
- ☆13Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year