ChaissonLab / danbing-tkLinks
Toolkit for VNTR genotyping and repeat-pan genome graph construction
☆31Updated 5 months ago
Alternatives and similar repositories for danbing-tk
Users that are interested in danbing-tk are comparing it to the libraries listed below
Sorting:
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Phasing reads with secondary alignments☆21Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Genome Assembly 102☆17Updated 9 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Tandem repeat genotyping with long reads☆35Updated 4 months ago
- ☆10Updated 5 years ago
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated 2 years ago
- ☆16Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- ☆15Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- Benchmark structural variant calls against a reference set☆18Updated this week
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Updated 7 months ago
- ☆23Updated 4 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆28Updated 3 weeks ago