Toolkit for VNTR genotyping and repeat-pan genome graph construction
☆36Aug 18, 2025Updated 11 months ago
Alternatives and similar repositories for danbing-tk
Users that are interested in danbing-tk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pangenome-based genome inference☆177Updated this week
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- VNTR annotation using motif selection☆44May 25, 2026Updated 2 months ago
- Targeted genotyper for complex polymorphic genes☆44Updated this week
- ☆20Nov 30, 2023Updated 2 years ago
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- Jasmine: SV Merging Across Samples☆260Dec 20, 2024Updated last year
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated 2 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆63Jul 27, 2026Updated 2 weeks ago
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆28Jul 15, 2026Updated 3 weeks ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Assemblies from HPP Year 1 production☆82May 9, 2023Updated 3 years ago
- Graph realignment tools for structural variants☆170Dec 8, 2022Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 5 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 8 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- Structural variant toolkit for VCFs☆421May 22, 2026Updated 2 months ago
- A tool for profiling long STRs from short reads☆107Apr 19, 2021Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 4 months ago
- ☆16Jan 10, 2022Updated 4 years ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Misassembly Identifier☆25Jun 2, 2026Updated 2 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Computational Pangenomics☆17Jun 1, 2022Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆57Mar 7, 2025Updated last year