Alternatives and similar repositories for HPP_Year1_Assemblies:

Users that are interested in HPP_Year1_Assemblies are comparing it to the libraries listed below

• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆57Updated 3 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 3 months ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆99Updated last week
• human-pangenomics / HG002_Data_Freeze_v1.0
  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
  ☆77Updated 2 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last month
• human-pangenomics / hpp_pangenome_resources
  ☆108Updated last year
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 2 months ago
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated this week
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆4Updated 2 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆101Updated last week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated this week
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated 2 weeks ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆74Updated last month
• daewoooo / SVbyEye
  ☆77Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆107Updated 3 weeks ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆98Updated 11 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated last year
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆80Updated last month
• twolinin / longphase
  ☆109Updated 3 weeks ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• kjenike / panagram
  ☆61Updated 2 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆87Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆50Updated 4 years ago
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆81Updated last week
• genome-in-a-bottle / genome-stratifications
  Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…
  ☆79Updated 2 years ago