Alternatives and similar repositories for HPP_Year1_Assemblies

Users that are interested in HPP_Year1_Assemblies are comparing it to the libraries listed below

• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆61Updated 4 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆129Updated 11 months ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆68Updated 7 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆104Updated 4 years ago
• twolinin / longphase
  ☆119Updated this week
• GeneDx / pgr-tk
  ☆101Updated last year
• human-pangenomics / hprc_intermediate_assembly
  ☆42Updated 2 weeks ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆114Updated last week
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆111Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆107Updated 9 months ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆84Updated 6 months ago
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆61Updated 4 years ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆109Updated 2 months ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆64Updated 2 weeks ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆128Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated last month
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆89Updated this week
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆58Updated 2 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆142Updated 2 weeks ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated 2 months ago
• human-pangenomics / hpp_pangenome_resources
  ☆124Updated 2 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆57Updated 3 years ago
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆73Updated 5 years ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆96Updated last year
• human-pangenomics / HG002_Data_Freeze_v1.0
  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
  ☆80Updated 3 years ago
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated last week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆93Updated 6 months ago