human-pangenomics / HPP_Year1_AssembliesLinks
Assemblies from HPP Year 1 production
☆74Updated 2 years ago
Alternatives and similar repositories for HPP_Year1_Assemblies
Users that are interested in HPP_Year1_Assemblies are comparing it to the libraries listed below
Sorting:
- ☆57Updated 4 years ago
- ☆114Updated last year
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 3 years ago
- Phased assembly variant caller☆120Updated 6 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week
- ☆112Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆54Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- PGR-TK: Pangenome Research Tool Kit☆100Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- Fast and accurate coordinate conversion between assemblies☆114Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Toolkit for calling structural variants using short or long reads☆105Updated last week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆78Updated 2 months ago
- Simple pileup-based variant caller☆90Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆118Updated 2 months ago
- Collection of tools for the analysis of CpG data☆85Updated 4 months ago
- Variant calling tool for long-read sequencing data☆110Updated 3 months ago
- ☆30Updated this week
- Pangenome-based genome inference☆129Updated this week
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ☆48Updated 10 months ago
- Call select base modifications in PacBio HiFi reads☆8Updated 4 months ago
- Structural Variant Identification Method using Genome Assemblies☆120Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Structural Variant Index☆74Updated 6 months ago
- A list of software for pangenomics☆117Updated last month
- Structural variant caller for real-time long-read sequencing data☆56Updated 2 years ago