Alternatives and similar repositories for HPP_Year1_Assemblies

Users that are interested in HPP_Year1_Assemblies are comparing it to the libraries listed below

• human-pangenomics / hprc_intermediate_assembly

  View on GitHub
  ☆44Feb 2, 2026Updated 2 weeks ago
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0

  View on GitHub
  ☆61Jun 14, 2021Updated 4 years ago
• human-pangenomics / hpp_pangenome_resources

  View on GitHub
  ☆127Oct 18, 2023Updated 2 years ago
• ekg / pafcheck

  View on GitHub
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Aug 10, 2025Updated 6 months ago
• marbl / HG002

  View on GitHub
  A complete diploid human genome
  ☆142Sep 26, 2025Updated 4 months ago
• chfi / gfaestus

  View on GitHub
  GFA visualizer, GPU-accelerated using Vulkan
  ☆75Aug 2, 2022Updated 3 years ago
• human-pangenomics / hpp_production_workflows

  View on GitHub
  WDL’s and Dockerfiles for assembly QC process
  ☆72Jul 26, 2025Updated 6 months ago
• cucapra / pollen

  View on GitHub
  generating hardware accelerators for pangenomic graph queries
  ☆39Feb 9, 2026Updated last week
• chfi / gfainject

  View on GitHub
  ☆18May 10, 2023Updated 2 years ago
• codialab / GFAffix

  View on GitHub
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37May 29, 2025Updated 8 months ago
• pangenome / impg

  View on GitHub
  implicit pangenome graph
  ☆88Feb 9, 2026Updated last week
• mlin / gfabase

  View on GitHub
  GFA insert into GenomicSQLite
  ☆49Jun 7, 2021Updated 4 years ago
• refresh-bio / agc

  View on GitHub
  Assembled Genomes Compressor
  ☆178Nov 25, 2024Updated last year
• at-cg / PanAligner

  View on GitHub
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Dec 20, 2023Updated 2 years ago
• ChaissonLab / danbing-tk

  View on GitHub
  Toolkit for VNTR genotyping and repeat-pan genome graph construction
  ☆31Aug 18, 2025Updated 5 months ago
• Maize-Genetics-and-Genomics-Database / PanEffect

  View on GitHub
  PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…
  ☆13Jan 30, 2024Updated 2 years ago
• pangenome / gafpack

  View on GitHub
  convert variation graph alignments to coverage maps over nodes
  ☆27Jan 21, 2026Updated 3 weeks ago
• mobinasri / flagger

  View on GitHub
  Evaluating genome assemblies
  ☆114Jan 11, 2026Updated last month
• GeneDx / pgr-tk

  View on GitHub
  ☆101Apr 22, 2024Updated last year
• pangenome / genotypify

  View on GitHub
  Genotyping lots of samples with big pangenomes
  ☆11Oct 30, 2025Updated 3 months ago
• Amjad-Khalaf / Inverted-kmers

  View on GitHub
  Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.
  ☆10Jun 6, 2025Updated 8 months ago
• MoinSebi / gSV

  View on GitHub
  ☆11Dec 9, 2022Updated 3 years ago
• brettChapman / paf2pav

  View on GitHub
  ☆10Feb 20, 2024Updated last year
• ASLeonard / pandrawer

  View on GitHub
  Everything but the kitchen sink
  ☆12Feb 6, 2025Updated last year
• fawaz-dabbaghieh / gfa_subgraphs

  View on GitHub
  Extracts subgraphs or components from a graph in GFA format
  ☆24Nov 18, 2024Updated last year
• maickrau / GraphAligner

  View on GitHub
  ☆284Dec 29, 2025Updated last month
• logsdon-lab / CenMAP

  View on GitHub
  Centromere mapping and annotation pipeline
  ☆22Updated this week
• asl / BandageNG

  View on GitHub
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆157Feb 1, 2026Updated 2 weeks ago
• pangenome / seqwish

  View on GitHub
  alignment to variation graph inducer
  ☆157Jan 20, 2026Updated 3 weeks ago
• marbl / T2T-Browser

  View on GitHub
  Genome browser hub for the T2T genomes and resources
  ☆27Sep 26, 2025Updated 4 months ago
• ekg / pafplot

  View on GitHub
  base-level dotplots from PAF alignments
  ☆31Sep 18, 2025Updated 4 months ago
• dubssieg / pancat

  View on GitHub
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆36May 14, 2025Updated 9 months ago
• jltsiren / gbwtgraph

  View on GitHub
  GBWT-based handle graph
  ☆31Updated this week
• broadinstitute / poasta

  View on GitHub
  Fast and exact gap-affine partial order alignment
  ☆59Feb 3, 2026Updated 2 weeks ago
• PalamaraLab / ASMC

  View on GitHub
  Ascertained Sequentially Markovian Coalescent
  ☆16Oct 22, 2025Updated 3 months ago
• pangenome / povu

  View on GitHub
  A toolkit for exploring regions of variation in pangenomes
  ☆14Updated this week
• vollgerlab / NucFreq

  View on GitHub
  ☆38Oct 6, 2025Updated 4 months ago
• pangenome / PanSN-spec

  View on GitHub
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆44Oct 13, 2024Updated last year
• vollgerlab / SafFire

  View on GitHub
  ☆31Updated this week