human-pangenomics / HPP_Year1_AssembliesLinks
Assemblies from HPP Year 1 production
☆73Updated 2 years ago
Alternatives and similar repositories for HPP_Year1_Assemblies
Users that are interested in HPP_Year1_Assemblies are comparing it to the libraries listed below
Sorting:
- ☆57Updated 3 years ago
- Phased assembly variant caller☆116Updated 6 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 2 years ago
- ☆114Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Joint structural variant and copy number variant caller for HiFi sequencing data☆52Updated 2 weeks ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- Simple pileup-based variant caller☆90Updated last month
- Pangenome-based genome inference☆127Updated last month
- Fast and accurate coordinate conversion between assemblies☆113Updated 2 months ago
- ☆28Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- A list of software for pangenomics☆115Updated 3 weeks ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆118Updated last month
- Collection of tools for the analysis of CpG data☆82Updated 4 months ago
- PGR-TK: Pangenome Research Tool Kit☆99Updated last year
- Toolkit for calling structural variants using short or long reads☆104Updated this week
- ☆62Updated last week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆76Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- WDL’s and Dockerfiles for assembly QC process☆67Updated 2 weeks ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- ☆112Updated last month
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- Mapping pipeline for data generated using Arima-HiC☆77Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago