Alternatives and similar repositories for HPP_Year1_Assemblies

Users that are interested in HPP_Year1_Assemblies are comparing it to the libraries listed below

• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆59Updated 4 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 4 years ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆111Updated last month
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆82Updated last week
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 3 months ago
• twolinin / longphase
  ☆114Updated 2 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆119Updated this week
• EichlerLab / pav
  Phased assembly variant caller
  ☆121Updated 7 months ago
• kjenike / panagram
  ☆63Updated last week
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆80Updated 2 months ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆100Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated 2 months ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆56Updated 2 years ago
• human-pangenomics / hpp_pangenome_resources
  ☆116Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 5 months ago
• human-pangenomics / HG002_Data_Freeze_v1.0
  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
  ☆80Updated 3 years ago
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 4 years ago
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆71Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 3 months ago
• shilpagarg / WHdenovo
  ☆47Updated 5 years ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆56Updated last week
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆119Updated 2 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆107Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆133Updated 3 weeks ago
• shilpagarg / DipAsm
  ☆76Updated 5 years ago
• marbl / HG002
  A complete diploid human genome
  ☆121Updated 6 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 2 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆81Updated 2 weeks ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆80Updated last year