Assemblies from HPP Year 1 production
☆83May 9, 2023Updated 3 years ago
Alternatives and similar repositories for HPP_Year1_Assemblies
Users that are interested in HPP_Year1_Assemblies are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆66Jun 14, 2021Updated 5 years ago
- ☆145Oct 9, 2026Updated last week
- ☆51Jun 27, 2026Updated 3 months ago
- A complete diploid human genome☆161Aug 10, 2026Updated 2 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Sep 9, 2026Updated last month
- WDL’s and Dockerfiles for assembly QC process☆73Sep 23, 2026Updated 3 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆85Jun 10, 2022Updated 4 years ago
- generating hardware accelerators for pangenomic graph queries☆45Jul 1, 2026Updated 3 months ago
- Pipelines for using T2T genome as a reference☆15Dec 11, 2024Updated last year
- ☆19May 10, 2023Updated 3 years ago
- Evaluating genome assemblies☆128Mar 3, 2026Updated 7 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- Assembled Genomes Compressor (AGC) squeezing 290 GB of Human Pangenome Project assemblies down to <1.5 GB (>190× ratio), with sample and …☆187Oct 5, 2026Updated last week
- Multiple sequence alignment of long tandem repeats☆34Oct 9, 2026Updated last week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- GBWT-based handle graph☆36Oct 10, 2026Updated last week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- ☆291Dec 29, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Dec 9, 2022Updated 3 years ago
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Updated this week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- Centromere mapping and annotation pipeline☆28Jun 26, 2026Updated 3 months ago
- Genome browser hub for the T2T genomes and resources☆33Oct 1, 2026Updated 2 weeks ago
- Resources for phage genomics and annotation☆11Oct 27, 2025Updated 11 months ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆254Dec 16, 2025Updated 10 months ago