Estimate locus specific human LINE-1 expression.
☆42Jan 19, 2026Updated 8 months ago
Alternatives and similar repositories for L1EM
Users that are interested in L1EM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for Quantifying Interspersed Repeat Expression☆69Jun 20, 2022Updated 4 years ago
- Quantification of transposable element expression using RNA-seq☆98Feb 8, 2024Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆26Aug 25, 2026Updated last month
- ☆21Nov 15, 2020Updated 5 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MEGAnE☆34Sep 13, 2023Updated 3 years ago
- ☆11Jan 29, 2020Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆48Mar 25, 2026Updated 6 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆35May 11, 2026Updated 4 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆128Apr 17, 2026Updated 5 months ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Dec 28, 2020Updated 5 years ago
- ☆17Mar 1, 2026Updated 7 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆34Dec 11, 2025Updated 9 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆37Apr 17, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Universal RObust Peak Annotator☆18Dec 19, 2023Updated 2 years ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆13Aug 27, 2025Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆294Aug 10, 2026Updated 2 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆17Feb 17, 2021Updated 5 years ago
- ☆35Jun 12, 2024Updated 2 years ago
- ☆12Mar 20, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated 2 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆95Jan 26, 2023Updated 3 years ago
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- SV detection tool for nanopore sequence reads☆99Mar 25, 2026Updated 6 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆95Sep 3, 2026Updated last month
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Mar 12, 2026Updated 6 months ago
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Oct 31, 2025Updated 11 months ago
- ☆17Jun 29, 2026Updated 3 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 7 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆25Sep 5, 2024Updated 2 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆258Oct 2, 2026Updated last week
- Genome-in-a-Bottle stratifications for major references☆16Apr 28, 2025Updated last year
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago