Alternatives and similar repositories for T2T-HG002Y

Users that are interested in T2T-HG002Y are comparing it to the libraries listed below

• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 2 months ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 8 months ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 3 years ago
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated last year
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆14Updated last year
• GeneDx / pgr-tk-notebooks
  ☆16Updated 2 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated this week
• hitbc / gcSV
  ☆21Updated this week
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated this week
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆14Updated last year
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆19Updated 5 months ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆29Updated 5 months ago
• wjidea / defusion
  defusion
  ☆14Updated 4 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆18Updated 5 months ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆22Updated 4 months ago
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆15Updated 4 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 4 years ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆24Updated 3 weeks ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated 2 years ago
• GillesFischerSorbonne / telofinder
  ☆16Updated last year
• quanc1989 / SV-ONT-Tibetan
  Characterization of Structural Variation in Chinese samples
  ☆18Updated 4 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated 2 years ago