arangrhie / T2T-HG002YLinks
Code repository for the T2T-Y paper
☆24Updated 2 years ago
Alternatives and similar repositories for T2T-HG002Y
Users that are interested in T2T-HG002Y are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆16Updated 4 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Consensus genome annotation using OMA☆26Updated 3 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Phasing reads with secondary alignments☆20Updated 9 months ago
- Gene copy number prediction from k-mer frequencies☆13Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆18Updated last year
- Genome Assembly 102☆15Updated 5 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated 3 weeks ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated last month
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆21Updated 3 weeks ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- ☆16Updated 2 years ago
- ☆12Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- ☆31Updated 5 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆21Updated 6 months ago