Alternatives and similar repositories for SRTsim

Users that are interested in SRTsim are comparing it to the libraries listed below

• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆39Updated last year
• wanglab-broad / CAST
  CAST package
  ☆41Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 4 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 10 months ago
• xryanglab / DeepLinc
  De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
  ☆19Updated 3 years ago
• dpeerlab / ENVI
  ☆50Updated 2 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆41Updated 9 months ago
• KlugerLab / SIMVI
  ☆15Updated 5 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• TencentAILabHealthcare / pysodb
  ☆26Updated last year
• zcang / SpaOTsc
  ☆45Updated 4 months ago
• LiHongCSBLab / SOAPy
  ☆31Updated 9 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆26Updated last year
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆33Updated 8 months ago
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆24Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆49Updated last year
• theislab / ncem_tutorials
  ☆13Updated 3 years ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 7 months ago
• welch-lab / cytosignal
  ☆20Updated this week
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆33Updated 2 years ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated 2 years ago
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆70Updated last month
• shuxiaoc / maxfuse
  ☆56Updated last year
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 10 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆99Updated last month
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆27Updated last year
• bm2-lab / SpaDo
  Multi-slice Spatial Transcriptome Domain Analysis.
  ☆12Updated last year
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆62Updated 3 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆68Updated 2 weeks ago