xzhoulab / SRTsimLinks
☆14Updated 2 months ago
Alternatives and similar repositories for SRTsim
Users that are interested in SRTsim are comparing it to the libraries listed below
Sorting:
- CAST package☆40Updated 7 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 7 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆35Updated 11 months ago
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- ☆11Updated 5 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- ☆20Updated last week
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 5 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 7 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated 11 months ago
- ☆13Updated 2 years ago
- ☆29Updated 3 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆45Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 8 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆17Updated 2 years ago
- ☆24Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 months ago
- ☆10Updated last year
- Developmental Spatiotemporal Optimal Transport☆11Updated 2 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆29Updated 3 weeks ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 4 months ago
- ☆26Updated 5 months ago
- ☆28Updated 3 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year