xzhoulab / SRTsimLinks
☆14Updated 4 months ago
Alternatives and similar repositories for SRTsim
Users that are interested in SRTsim are comparing it to the libraries listed below
Sorting:
- Spatial direct messaging detected by bivariate Moran☆27Updated 3 weeks ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆18Updated 2 years ago
- CAST package☆40Updated 9 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆15Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Spatially resolved transcriptomic analysis☆58Updated 2 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 8 months ago
- ☆31Updated 5 months ago
- ☆10Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- ☆26Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 2 months ago
- ☆53Updated 9 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- cTPnet Package☆25Updated 3 years ago
- ☆13Updated 3 years ago
- ☆29Updated 5 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆35Updated 2 months ago
- ☆18Updated last month
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆52Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 9 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- ☆23Updated 2 years ago