TrigosTeam / SPIATLinks
☆25Updated last week
Alternatives and similar repositories for SPIAT
Users that are interested in SPIAT are comparing it to the libraries listed below
Sorting:
- Methods for visualization and analysis of spatially-resolved gene expression☆22Updated 5 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- ☆53Updated 2 years ago
- Spatial One☆30Updated last year
- ☆20Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 8 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- An R package for performing cell typing in SMI and other single cell data☆48Updated 8 months ago
- ☆18Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 5 months ago
- ☆23Updated 2 years ago
- ☆27Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Updated last year
- Spatial RNA velocity☆10Updated last year
- Scripts from the GBM cellular states paper☆20Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 11 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated this week
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Updated 2 years ago
- Code for spatial subclone paper☆16Updated last year
- ☆30Updated 9 months ago
- ☆15Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Updated 7 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated 2 years ago
- ☆14Updated 2 weeks ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago