TrigosTeam / SPIATLinks
☆25Updated 8 months ago
Alternatives and similar repositories for SPIAT
Users that are interested in SPIAT are comparing it to the libraries listed below
Sorting:
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 3 months ago
- Spatial One☆29Updated last year
- ☆53Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 weeks ago
- An R package for performing cell typing in SMI and other single cell data☆43Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated 2 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated 2 months ago
- ☆30Updated 7 months ago
- ☆23Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 6 months ago
- ☆20Updated 2 years ago
- Scripts from the GBM cellular states paper☆20Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- ☆20Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- ☆14Updated 2 months ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆24Updated 2 months ago
- ☆13Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆30Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆28Updated last year
- An R package for handling and analysing imaging mass cytometry data☆28Updated last month
- ☆30Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 9 months ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- Spatial RNA velocity☆10Updated last year