TrigosTeam / SPIATLinks
☆23Updated 2 months ago
Alternatives and similar repositories for SPIAT
Users that are interested in SPIAT are comparing it to the libraries listed below
Sorting:
- An R package for handling and analysing imaging mass cytometry data☆26Updated this week
- ☆52Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 7 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆19Updated this week
- A package for the analysis of Imaging Mass Cytometry data☆13Updated last week
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- iterative clustering pipeline of big single cell datasets.☆31Updated 3 weeks ago
- ☆19Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆12Updated 7 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 3 weeks ago
- ☆18Updated 2 years ago
- CAST package☆38Updated 7 months ago
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆19Updated 3 weeks ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 10 months ago
- ☆16Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- An R package for performing cell typing in SMI and other single cell data☆37Updated last week
- Spatial transcriptomics analyses and decoding in R☆21Updated 3 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- ☆27Updated 3 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago