TrigosTeam / SPIATLinks
☆24Updated 6 months ago
Alternatives and similar repositories for SPIAT
Users that are interested in SPIAT are comparing it to the libraries listed below
Sorting:
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated last month
- ☆53Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 11 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated last year
- Spatial One☆28Updated 11 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 4 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆26Updated 5 months ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆22Updated last week
- iterative clustering pipeline of big single cell datasets.☆33Updated last month
- ☆23Updated 2 years ago
- ☆20Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- An R package for performing cell typing in SMI and other single cell data☆40Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Updated last year
- ☆29Updated 3 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆31Updated 8 months ago
- ☆11Updated 2 years ago
- A package for the analysis of Imaging Mass Cytometry data☆13Updated 4 months ago
- An R package for handling and analysing imaging mass cytometry data☆27Updated last week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- CAST package☆40Updated 11 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆80Updated 3 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year