TrigosTeam / SPIAT
☆22Updated last week
Alternatives and similar repositories for SPIAT:
Users that are interested in SPIAT are comparing it to the libraries listed below
- ☆47Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆12Updated 5 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated last week
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 8 months ago
- iterative clustering pipeline of big single cell datasets.☆29Updated last month
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆16Updated 5 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆12Updated 11 months ago
- An R package for handling and analysing imaging mass cytometry data☆24Updated 4 months ago
- ☆21Updated last year
- CAST package☆32Updated 4 months ago
- ☆21Updated 3 weeks ago
- ☆9Updated 8 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆10Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last year
- ☆18Updated last year
- ☆18Updated 2 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆14Updated 9 months ago
- ☆10Updated 10 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 weeks ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- Scripts from the GBM cellular states paper☆18Updated 4 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated this week
- ☆13Updated 2 years ago
- ☆14Updated last month
- ☆16Updated 7 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆17Updated 3 weeks ago