Tools for generating single-cell gene expression data
☆34Jun 20, 2025Updated last year
Alternatives and similar repositories for CellBin
Users that are interested in CellBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit of spatial transcriptomic analysis.☆296Jul 17, 2026Updated 3 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 3 years ago
- Spatial transcriptome analysis in python☆25Jan 26, 2025Updated last year
- This repository is for CellBin research group☆37Updated this week
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆15Apr 29, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 4 years ago
- ☆203Sep 18, 2024Updated 2 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆80Jan 17, 2025Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆40Jan 13, 2026Updated 9 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆24Sep 30, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tumor Immune Single-cell Hub☆23Aug 13, 2020Updated 6 years ago
- Analysis scripts and notebooks for Numbat paper☆10Aug 12, 2022Updated 4 years ago
- ☆49Jun 3, 2026Updated 4 months ago
- ☆13Oct 9, 2025Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆52Aug 18, 2025Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 8 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆36Dec 17, 2021Updated 4 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆19Mar 14, 2025Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆24Mar 29, 2023Updated 3 years ago
- An algorithm in Python that locates the TLS and lymphoid aggregates in tissues using immune cell coordinates☆12Aug 3, 2026Updated 2 months ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- ☆150Jun 25, 2026Updated 4 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- ☆18Mar 18, 2025Updated last year
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial omics analysis toolbox☆394Updated this week
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆135May 29, 2025Updated last year
- ☆40Nov 17, 2022Updated 3 years ago
- Charting spatial ligand-target activity using Renoir (ligand-taRgEt iNteractions acrOss spatIal topogRaphy)☆23Jun 26, 2026Updated 4 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- ☆14Jun 1, 2026Updated 4 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated 3 weeks ago