Tools for generating single-cell gene expression data
☆34Jun 20, 2025Updated 9 months ago
Alternatives and similar repositories for CellBin
Users that are interested in CellBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit of spatial transcriptomic analysis.☆275Updated this week
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆70Oct 1, 2023Updated 2 years ago
- This repository is for CellBin research group☆35Updated this week
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- ☆134Apr 24, 2024Updated last year
- ☆188Sep 18, 2024Updated last year
- ☆49Mar 12, 2026Updated last month
- Tumor Immune Single-cell Hub☆22Aug 13, 2020Updated 5 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated 11 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Jan 17, 2025Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆48Aug 18, 2025Updated 7 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- ☆16Mar 18, 2025Updated last year
- QuPath extension for Cellsparse☆19May 6, 2025Updated 11 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆31May 27, 2025Updated 10 months ago
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆43Feb 19, 2026Updated last month
- Spatial omics analysis toolbox☆368Apr 3, 2026Updated last week
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Apr 21, 2021Updated 4 years ago
- ☆14Jan 16, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆130May 29, 2025Updated 10 months ago
- spatial transcriptome, single cell☆74Mar 18, 2023Updated 3 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆15Nov 6, 2024Updated last year
- Spatial transcriptome analysis in python☆25Jan 26, 2025Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆139Feb 20, 2025Updated last year
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"☆15Oct 4, 2024Updated last year
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆17Nov 13, 2024Updated last year
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆20Feb 13, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆28Mar 11, 2025Updated last year
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- ☆11Nov 12, 2025Updated 5 months ago
- ☆25Jan 9, 2026Updated 3 months ago
- Multiview Intercellular SpaTial modeling framework☆72Jan 15, 2026Updated 2 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- ☆14Jan 25, 2023Updated 3 years ago