STOmics / CellBin
Tools for generating single-cell gene expression data
☆32Updated 10 months ago
Alternatives and similar repositories for CellBin:
Users that are interested in CellBin are comparing it to the libraries listed below
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last month
- ☆21Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- ☆49Updated 2 years ago
- ☆13Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- ☆47Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆62Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆26Updated 9 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆72Updated last month
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- ☆28Updated 2 years ago
- ☆24Updated 2 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆62Updated 3 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆57Updated 5 months ago
- R implementation of GeneTrajectory☆58Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆69Updated this week
- ☆25Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆67Updated 2 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆30Updated last week
- R package for pathway analysis in scRNA-seq data☆73Updated 8 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆49Updated 2 months ago
- ☆44Updated 11 months ago
- Code used to benchmark Xenium☆57Updated 9 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆34Updated last week