Alternatives and similar repositories for Banksy_py:

Users that are interested in Banksy_py are comparing it to the libraries listed below

• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆69Updated last year
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆22Updated 3 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆24Updated this week
• dpeerlab / ENVI
  ☆43Updated 3 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆39Updated last week
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆34Updated this week
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆29Updated last month
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆50Updated last week
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆32Updated last year
• scverse / spatialdata-notebooks
  ☆39Updated this week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated last month
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆25Updated 3 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆73Updated last week
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆101Updated 3 weeks ago
• spacetx-spacejam / data
  data for spacejam2
  ☆17Updated 2 years ago
• wollmanlab / JSTA
  ☆14Updated 2 years ago
• wanglab-broad / CAST
  CAST package
  ☆27Updated 2 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆42Updated 6 months ago
• yuqiyuqitan / SPACEc
  ☆22Updated this week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆17Updated 5 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆21Updated 5 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆30Updated 6 months ago
• LiHongCSBLab / SOAPy
  ☆16Updated this week
• jian-shu-lab / Bering
  ☆14Updated this week
• iancovert / persist
  ☆14Updated 5 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆30Updated 6 months ago
• brianpenghe / python-genomics
  A set of files to do genomics analysis on python
  ☆18Updated last month
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆36Updated 4 months ago