prabhakarlab / Banksy_pyLinks
BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics analysis.
☆72Updated 2 months ago
Alternatives and similar repositories for Banksy_py
Users that are interested in Banksy_py are comparing it to the libraries listed below
Sorting:
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated last month
- End-to-end analysis of spatial multi-omics data☆101Updated 2 months ago
- ☆52Updated 3 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- Code used to benchmark Xenium☆73Updated last year
- ☆57Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- CAST package☆42Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Updated 5 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆107Updated last week
- spatial transcriptome, single cell☆73Updated 2 years ago
- Join subcellular Visium HD bins into cells☆132Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆79Updated 10 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Updated 3 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 10 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated last month
- R implementation of GeneTrajectory☆69Updated last year
- ☆127Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 10 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆81Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated last month
- ☆47Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆98Updated 10 months ago
- Spatial Single-Cell Analysis Toolkit☆106Updated last week
- Single cell omics biology annotations☆51Updated 8 months ago
- ☆58Updated last month