prabhakarlab / Banksy_pyView external linksLinks
BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics analysis.
☆72Nov 13, 2025Updated 3 months ago
Alternatives and similar repositories for Banksy_py
Users that are interested in Banksy_py are comparing it to the libraries listed below
Sorting:
- BANKSY: spatial clustering☆136Oct 15, 2025Updated 3 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Aug 11, 2025Updated 6 months ago
- ☆13Aug 9, 2022Updated 3 years ago
- Reproducible analyses for the NicheCompass manuscript☆13Jul 3, 2025Updated 7 months ago
- ☆13Nov 3, 2023Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Aug 10, 2025Updated 6 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 3 months ago
- ☆34Oct 22, 2025Updated 3 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆239Jan 9, 2026Updated last month
- Code used to benchmark Xenium☆75Jun 30, 2024Updated last year
- ☆15Jan 6, 2024Updated 2 years ago
- Join subcellular Visium HD bins into cells☆135Nov 4, 2025Updated 3 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆150Nov 23, 2025Updated 2 months ago
- ☆13Sep 3, 2025Updated 5 months ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 8 months ago
- ☆20Jan 10, 2025Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Mar 2, 2025Updated 11 months ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- ☆31Aug 2, 2023Updated 2 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆263Updated this week
- End-to-end analysis of spatial multi-omics data☆102Jan 26, 2026Updated 2 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆100Feb 26, 2025Updated 11 months ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆12Feb 1, 2026Updated last week
- ☆33Jan 26, 2026Updated 2 weeks ago
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 2 months ago
- ☆17Mar 18, 2025Updated 10 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 10 months ago
- Bayesian Analytics for Spatial Segmentation☆30May 4, 2025Updated 9 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆150Jan 19, 2026Updated 3 weeks ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Cross-attention-based cell-cell interaction inference from ST data.☆17Feb 2, 2026Updated last week
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- ☆12Nov 20, 2023Updated 2 years ago
- Spatiotemporal modeling of spatial transcriptomics☆327Jan 12, 2026Updated last month
- ☆35Dec 22, 2024Updated last year
- Static plotting for spatialdata☆73Jan 30, 2026Updated 2 weeks ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆416Jan 19, 2026Updated 3 weeks ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated 6 months ago