BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics analysis.
☆90Jul 4, 2026Updated 2 months ago
Alternatives and similar repositories for Banksy_py
Users that are interested in Banksy_py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BANKSY: spatial clustering☆159May 30, 2026Updated 3 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆56Aug 11, 2025Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- ☆24Jan 10, 2025Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆154Aug 21, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆291Updated this week
- ☆22Jan 6, 2024Updated 2 years ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 3 months ago
- ☆34Feb 25, 2025Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆189Updated this week
- End-to-end analysis of spatial multi-omics data☆124Aug 28, 2026Updated last week
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Updated this week
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 4 months ago
- Robust and scalable single-cell signature scoring☆28Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A novel machine learning pipeline to analyse spatial transcriptomics data☆257Jul 12, 2026Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆111Updated this week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆187Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- Reproducible analyses for the NicheCompass manuscript☆14Aug 28, 2026Updated last week
- Spatiotemporal modeling of spatial transcriptomics☆343Feb 25, 2026Updated 6 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆462Updated this week
- Spatial alignment of single cell transcriptomic data.☆372Jul 1, 2025Updated last year
- ☆13Aug 9, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆13Nov 3, 2023Updated 2 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆118Jun 9, 2025Updated last year
- ☆32Jul 27, 2026Updated last month
- ☆38Jan 22, 2026Updated 7 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆145Jun 25, 2026Updated 2 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆30Mar 11, 2025Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆97Updated this week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Jul 7, 2026Updated last month
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- ☆163Mar 19, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- ☆36Oct 22, 2025Updated 10 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆71Apr 21, 2026Updated 4 months ago
- ☆32Aug 2, 2023Updated 3 years ago