De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
☆21Oct 11, 2022Updated 4 years ago
Alternatives and similar repositories for DeepLinc
Users that are interested in DeepLinc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Mar 18, 2025Updated last year
- ☆150Jun 25, 2026Updated 4 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for spatial subclone paper☆19Jan 23, 2025Updated last year
- Analysis of smFISH data☆12Aug 27, 2018Updated 8 years ago
- ☆165Mar 19, 2024Updated 2 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- Reproducible analyses for the NicheCompass manuscript☆15Updated this week
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆80Jan 17, 2025Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆24Sep 30, 2022Updated 4 years ago
- ☆36Jun 15, 2026Updated 4 months ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 4 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 9 months ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- ☆16Jan 24, 2023Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆61Aug 13, 2026Updated 2 months ago
- HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shapin…☆23Aug 30, 2024Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆105Feb 11, 2026Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆52Apr 8, 2024Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- BANKSY: spatial clustering☆170Updated this week
- ☆15Aug 9, 2023Updated 3 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24May 10, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆375Jul 1, 2025Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 3 years ago
- Statistical analysis for spatial omics data☆12Jul 30, 2022Updated 4 years ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆71Jun 29, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆28Jan 14, 2020Updated 6 years ago
- ☆14Jun 11, 2023Updated 3 years ago
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Sep 30, 2026Updated last month
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆104Jul 4, 2026Updated 3 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago