xryanglab / DeepLinc
De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
☆16Updated 2 years ago
Alternatives and similar repositories for DeepLinc:
Users that are interested in DeepLinc are comparing it to the libraries listed below
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 4 months ago
- Bayesian Analytics for Spatial Segmentation☆25Updated 5 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 8 months ago
- code and dataset for spatialDWLS☆13Updated 3 years ago
- ☆45Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated last month
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆31Updated last month
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆12Updated 11 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated 3 weeks ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆23Updated 6 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- CAST package☆31Updated 4 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆13Updated 2 years ago
- ☆21Updated 2 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 5 months ago
- ☆44Updated 10 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆18Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆25Updated last year
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆23Updated last year
- ☆16Updated last week
- Python implementation of Gene Trajectory☆25Updated 6 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- ☆38Updated 2 years ago