xryanglab / DeepLincLinks
De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
☆18Updated 2 years ago
Alternatives and similar repositories for DeepLinc
Users that are interested in DeepLinc are comparing it to the libraries listed below
Sorting:
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- CAST package☆40Updated 10 months ago
- code and dataset for spatialDWLS☆13Updated 4 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 6 months ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- ☆18Updated 3 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- ☆50Updated 3 months ago
- ☆14Updated 5 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆15Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated 10 months ago
- ☆31Updated 6 months ago
- ☆22Updated 2 years ago
- ☆12Updated 3 years ago
- Spatial Cellular Estimator for Tumors☆57Updated this week
- ☆13Updated 3 years ago
- ☆24Updated 2 years ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆26Updated 4 months ago
- ☆30Updated 3 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 2 months ago
- Publically accessible code for DIISCO method☆12Updated 9 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 4 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- ☆19Updated 2 years ago