xryanglab / DeepLinc
De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
☆17Updated 2 years ago
Alternatives and similar repositories for DeepLinc:
Users that are interested in DeepLinc are comparing it to the libraries listed below
- CAST package☆34Updated 6 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- code and dataset for spatialDWLS☆13Updated 4 years ago
- Spatial direct messaging detected by bivariate Moran☆26Updated this week
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- ☆28Updated 2 months ago
- ☆48Updated last month
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 7 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 10 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆13Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 6 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆34Updated this week
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆49Updated 3 months ago
- ☆43Updated last year
- ☆17Updated 2 weeks ago
- ☆12Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 3 months ago
- Bayesian Analytics for Spatial Segmentation☆27Updated 6 months ago
- ☆14Updated last month
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆24Updated 8 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- ☆38Updated 2 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆30Updated 2 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆26Updated 2 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 5 months ago