xryanglab / DeepLincLinks
De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
☆21Updated 3 years ago
Alternatives and similar repositories for DeepLinc
Users that are interested in DeepLinc are comparing it to the libraries listed below
Sorting:
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- ☆33Updated 11 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- ☆30Updated 9 months ago
- ☆34Updated 3 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Updated last year
- CAST package☆42Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Updated last year
- code and dataset for spatialDWLS☆14Updated 4 years ago
- ☆26Updated 10 months ago
- Publically accessible code for DIISCO method☆12Updated 3 months ago
- ☆52Updated 4 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- Spot pseudo-Imager on top of histology☆44Updated last month
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated last month
- ☆40Updated 2 years ago
- ☆40Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- Detect hierarchical structures in cell-cell communications☆16Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- ☆47Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago