xryanglab / DeepLincLinks
De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
☆17Updated 2 years ago
Alternatives and similar repositories for DeepLinc
Users that are interested in DeepLinc are comparing it to the libraries listed below
Sorting:
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 2 months ago
- CAST package☆40Updated 7 months ago
- ☆48Updated last month
- ☆29Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 4 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated 11 months ago
- ☆39Updated 2 years ago
- code and dataset for spatialDWLS☆13Updated 4 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆36Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- ☆14Updated 3 months ago
- ☆28Updated 3 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 4 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆41Updated last year
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆13Updated 3 weeks ago
- Spatial transcriptome analysis in python☆23Updated 4 months ago
- ☆54Updated 6 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆49Updated 2 weeks ago
- ☆21Updated 2 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 2 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 months ago
- Publically accessible code for DIISCO method☆11Updated 7 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆32Updated last month
- The benchmarking of spatial transcriptomics deconvolution methods☆31Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last year