pekjoonwu / CELINALinks
☆16Updated 9 months ago
Alternatives and similar repositories for CELINA
Users that are interested in CELINA are comparing it to the libraries listed below
Sorting:
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 8 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 3 months ago
- ☆18Updated 2 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 weeks ago
- ☆14Updated 3 months ago
- ☆30Updated 4 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆12Updated 11 months ago
- ☆22Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 2 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆20Updated last year
- Profile purification of single-cell spatial transcriptomics data☆17Updated last month
- ☆14Updated 2 years ago
- ☆31Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Single Cell Analysis Operations☆13Updated 6 months ago
- ☆31Updated 6 months ago
- scTM: A package for topic modelling in transcriptomics data☆22Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- ☆31Updated 2 months ago
- ☆56Updated 3 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆79Updated 2 years ago
- Spatial transcriptomics of heart tissue☆25Updated 3 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Updated 3 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago