Alternatives and similar repositories for MENDER

Users that are interested in MENDER are comparing it to the libraries listed below

• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆80Updated this week
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆25Updated 8 months ago
• TencentAILabHealthcare / pysodb
  ☆26Updated last year
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• jianhuupenn / MorphLink
  MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics
  ☆16Updated last week
• scverse / spatialdata-notebooks
  ☆62Updated last week
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆33Updated 4 months ago
• SydneyBioX / HEtoSGEBench
  ☆16Updated 10 months ago
• loicchadoutaud / sCellST
  ☆13Updated last month
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆37Updated 3 years ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆74Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆25Updated 9 months ago
• zhaofangyuan98 / SDMBench
  ☆42Updated last year
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆70Updated last month
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆46Updated last year
• ElementoLab / utag
  ☆39Updated last year
• raphael-group / paste_reproducibility
  ☆13Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆39Updated last year
• dpeerlab / ENVI
  ☆50Updated 2 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆84Updated 3 weeks ago
• AI4SCR / ATHENA
  ☆35Updated last month
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆49Updated last year
• Teichlab / celcomen
  ☆18Updated this week
• hongleir / SpaceFlow
  ☆31Updated 2 years ago
• FrancisCrickInstitute / TRACERx-PHLEX
  Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
  ☆13Updated 4 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 5 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 7 months ago
• CaiGroup / seqFISH-PLUS
  ☆53Updated 4 years ago
• angelolab / pixie
  Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering
  ☆12Updated 2 years ago
• spacetx-spacejam / data
  data for spacejam2
  ☆18Updated 3 years ago