Alternatives and similar repositories for MENDER

Users that are interested in MENDER are comparing it to the libraries listed below

• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆43Updated 2 weeks ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆64Updated last year
• scverse / spatialdata-notebooks
  ☆53Updated last week
• dpeerlab / ENVI
  ☆48Updated last month
• spacetx-spacejam / data
  data for spacejam2
  ☆17Updated 2 years ago
• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆34Updated 10 months ago
• zhaofangyuan98 / SDMBench
  ☆34Updated 11 months ago
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆21Updated last month
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated 2 months ago
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆34Updated 3 years ago
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆14Updated 2 months ago
• ElementoLab / utag
  ☆35Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated last week
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆26Updated 5 years ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆18Updated 3 years ago
• prabhakarlab / Banksy_py
  ☆47Updated 5 months ago
• CaiGroup / seqFISH-PLUS
  ☆50Updated 4 years ago
• scverse / spatialdata-io
  ☆61Updated this week
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆27Updated 2 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 11 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated 2 weeks ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆42Updated 9 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆39Updated last year
• giovp / spatialdata-sandbox
  ☆13Updated 3 weeks ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆54Updated last year
• wanglab-broad / CAST
  CAST package
  ☆34Updated 6 months ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated 9 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated 2 months ago