yuanzhiyuan / MENDERLinks
☆12Updated last year
Alternatives and similar repositories for MENDER
Users that are interested in MENDER are comparing it to the libraries listed below
Sorting:
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆59Updated last week
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated 6 months ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆16Updated last week
- ☆24Updated last year
- ☆62Updated last week
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- ☆16Updated last week
- ☆50Updated last month
- data for spacejam2☆17Updated 3 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆71Updated last year
- ☆66Updated last week
- ☆17Updated 7 months ago
- ☆13Updated 3 months ago
- ☆52Updated 4 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆38Updated last year
- Reproducing the experiments of the DestVI paper☆21Updated 3 years ago
- ☆39Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated last week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆30Updated 3 months ago
- ☆33Updated 10 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 3 months ago
- ☆15Updated 9 months ago
- ☆35Updated last week
- Interactive applications of stlearn☆15Updated 2 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 7 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆11Updated 2 years ago