yuanzhiyuan / MENDERView external linksLinks
☆15Jan 6, 2024Updated 2 years ago
Alternatives and similar repositories for MENDER
Users that are interested in MENDER are comparing it to the libraries listed below
Sorting:
- ☆13Mar 29, 2024Updated last year
- ☆12Mar 22, 2023Updated 2 years ago
- ☆17Mar 18, 2025Updated 10 months ago
- ☆43May 31, 2024Updated last year
- ☆12Jun 6, 2024Updated last year
- ☆31Aug 2, 2023Updated 2 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- Spatial analysis of FISH data☆34May 20, 2025Updated 8 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Apr 8, 2025Updated 10 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆73Nov 13, 2025Updated 3 months ago
- Localization analysis software for super-resolution microscopy☆22Sep 19, 2025Updated 4 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Oct 1, 2023Updated 2 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated 11 months ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆23Dec 19, 2024Updated last year
- scType rewritten in python☆25Nov 7, 2024Updated last year
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆28Jan 4, 2024Updated 2 years ago
- single-cell decorrelated module networks☆30Aug 24, 2024Updated last year
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆25Mar 13, 2024Updated last year
- ☆21Feb 9, 2026Updated last week
- Reproducibility notebooks for scPoli☆22May 5, 2023Updated 2 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 6 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆69Nov 3, 2025Updated 3 months ago
- ☆65Feb 9, 2026Updated last week
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆26Mar 11, 2025Updated 11 months ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆110Jul 4, 2025Updated 7 months ago
- ☆30May 4, 2025Updated 9 months ago
- Static plotting for spatialdata☆73Feb 9, 2026Updated last week
- Tutorials for Squidpy☆35Dec 18, 2025Updated last month
- ☆21May 6, 2025Updated 9 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆151Nov 23, 2025Updated 2 months ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated last month
- ☆34Oct 22, 2025Updated 3 months ago
- ☆29Apr 26, 2024Updated last year
- Bayesian Analytics for Spatial Segmentation☆30May 4, 2025Updated 9 months ago