Cross-platform data for sequencing-based spatial transcriptomics benchmarking
☆13Oct 26, 2023Updated 2 years ago
Alternatives and similar repositories for cadasSTre
Users that are interested in cadasSTre are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆16Aug 15, 2024Updated 2 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Jan 24, 2024Updated 2 years ago
- ☆20Sep 15, 2020Updated 6 years ago
- ☆13Mar 29, 2024Updated 2 years ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆15Apr 23, 2024Updated 2 years ago
- ☆14Jul 16, 2024Updated 2 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆35Jul 13, 2024Updated 2 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- ☆28Feb 25, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆15Jul 10, 2024Updated 2 years ago
- ☆19Aug 1, 2023Updated 3 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆16Mar 26, 2025Updated last year
- Code for the spatial transcriptomic paper on IPF lungs☆24Jul 18, 2024Updated 2 years ago
- ☆36Oct 22, 2025Updated 11 months ago
- ☆14Jul 18, 2025Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatial Single Cell transcriptomic library☆23Jan 15, 2026Updated 8 months ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆18Feb 6, 2026Updated 8 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆18Feb 10, 2023Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆20Mar 29, 2023Updated 3 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Jun 21, 2026Updated 3 months ago
- ☆15Feb 28, 2022Updated 4 years ago
- This is my index list repo for my CS course projects of SUSTech. Current: CS103, CS106, CS109, CS201, CS202, CS205, CS207, CS304, CS305, …☆16Jun 27, 2025Updated last year
- ☆24Mar 22, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆43Jun 11, 2022Updated 4 years ago
- Codes used in LISTA project.☆14Apr 17, 2024Updated 2 years ago
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆24Jun 5, 2020Updated 6 years ago
- CellRank 2's reproducibility repository.☆17Sep 4, 2024Updated 2 years ago
- ☆20May 1, 2023Updated 3 years ago
- R package for transcriptomic biological age analysis☆29Sep 29, 2026Updated last week
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago