SPatial INtegration of spatially resolved transcriptomics datasets
☆18Mar 14, 2025Updated 11 months ago
Alternatives and similar repositories for spin
Users that are interested in spin are comparing it to the libraries listed below
Sorting:
- ☆18Feb 5, 2025Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆52Oct 9, 2025Updated 4 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Aug 11, 2025Updated 6 months ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆25Sep 23, 2024Updated last year
- Code associated with the data analysis for Miyoshi & Morabito 2024☆27Jul 8, 2025Updated 7 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 11 months ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated 10 months ago
- ☆14Mar 28, 2025Updated 11 months ago
- ☆13Jun 6, 2024Updated last year
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- Interactive visualisation of CellphoneDB results☆11Jan 15, 2025Updated last year
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 7 months ago
- ☆13Mar 29, 2024Updated last year
- Tools for assessing clustering robustness☆31Jan 29, 2026Updated last month
- ☆31May 4, 2025Updated 9 months ago
- R package IReNA☆29Nov 13, 2024Updated last year
- ☆13Sep 30, 2024Updated last year
- ☆12Sep 29, 2023Updated 2 years ago
- Publically accessible code for DIISCO method☆12Oct 15, 2025Updated 4 months ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Auto-annotations from Mouse brain development☆13Jul 11, 2020Updated 5 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated 10 months ago
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago
- ☆35Oct 22, 2025Updated 4 months ago
- ☆17Oct 23, 2025Updated 4 months ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- ☆19Feb 9, 2026Updated 2 weeks ago
- ☆11May 30, 2023Updated 2 years ago
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 7 months ago
- Localization analysis software for super-resolution microscopy☆22Sep 19, 2025Updated 5 months ago
- ☆15Jan 6, 2024Updated 2 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 7 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated last week
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- ☆13Aug 9, 2022Updated 3 years ago