wanglab-broad / spinLinks
SPatial INtegration of spatially resolved transcriptomics datasets
☆17Updated 8 months ago
Alternatives and similar repositories for spin
Users that are interested in spin are comparing it to the libraries listed below
Sorting:
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 9 months ago
- ☆30Updated 6 months ago
- Publically accessible code for DIISCO method☆12Updated last month
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- ☆24Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 9 months ago
- CAST package☆41Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- ☆31Updated 9 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- scTM: A package for topic modelling in transcriptomics data☆24Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 10 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆43Updated 3 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆14Updated 3 months ago
- ☆14Updated 5 months ago
- ☆23Updated 9 months ago
- ☆29Updated this week
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆16Updated last year
- ☆32Updated last month
- Single-Cell Inference of Class Switch Recombination☆20Updated 2 weeks ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆15Updated last month
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Updated last year
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆33Updated 7 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- ☆20Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week