SPatial INtegration of spatially resolved transcriptomics datasets
☆18Mar 14, 2025Updated last year
Alternatives and similar repositories for spin
Users that are interested in spin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆19Feb 5, 2025Updated last year
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- ☆53Oct 9, 2025Updated 7 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated last year
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 2 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆53Aug 11, 2025Updated 9 months ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 4 years ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆30Jul 8, 2025Updated 10 months ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 9 months ago
- CAST package☆44Oct 26, 2024Updated last year
- Code used to benchmark Xenium☆81Apr 10, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tools for assessing clustering robustness☆32Apr 2, 2026Updated last month
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 5 years ago
- ☆13Jun 6, 2024Updated last year
- ☆14Mar 28, 2025Updated last year
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 9 months ago
- ☆11May 30, 2023Updated 2 years ago
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- ☆22Jan 10, 2025Updated last year
- ☆22May 6, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-resolution Variational Inference☆23Apr 27, 2026Updated 3 weeks ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 9 months ago
- ☆14Aug 9, 2017Updated 8 years ago
- ☆13Mar 29, 2024Updated 2 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- ☆33May 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- ☆22Feb 27, 2026Updated 2 months ago
- spatial transcriptome, single cell☆75Mar 18, 2023Updated 3 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 10 months ago
- Fast algorithms for GLM-PCA.☆15Mar 12, 2025Updated last year
- ☆13Sep 30, 2024Updated last year
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year