wanglab-broad / spinLinks
SPatial INtegration of spatially resolved transcriptomics datasets
☆17Updated 3 months ago
Alternatives and similar repositories for spin
Users that are interested in spin are comparing it to the libraries listed below
Sorting:
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 8 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 10 months ago
- CAST package☆40Updated 8 months ago
- ☆39Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 3 weeks ago
- Python implementation of Gene Trajectory☆25Updated 9 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- ☆23Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- iterative clustering pipeline of big single cell datasets.☆32Updated last month
- Publically accessible code for DIISCO method☆11Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 8 months ago
- ☆18Updated last month
- ☆28Updated 4 months ago
- ☆20Updated 2 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆14Updated 8 months ago
- Accurate and fast cell marker gene identification with COSG☆44Updated 3 months ago
- ☆22Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 5 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆16Updated 7 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- ☆28Updated last month