Cell level integrated analysis of tissue histology and spatial transcriptomics
☆32Oct 6, 2025Updated 7 months ago
Alternatives and similar repositories for Thor
Users that are interested in Thor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Spatial One☆30Oct 31, 2024Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- ☆26Jun 25, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆34Apr 9, 2025Updated last year
- ☆21Apr 7, 2025Updated last year
- ☆29Jan 4, 2024Updated 2 years ago
- Interactive applications of stlearn☆15May 1, 2023Updated 3 years ago
- ☆17Mar 18, 2025Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆49Aug 18, 2025Updated 9 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆22May 16, 2025Updated last year
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆70Apr 24, 2026Updated 3 weeks ago
- AI-Driven Code Generation, Explanation and Execution for Data Analysis☆24Sep 11, 2024Updated last year
- MERFISH decoding software☆26Aug 16, 2025Updated 9 months ago
- ☆28Apr 1, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆28Dec 7, 2024Updated last year
- Pipeline for designing custom probes against human genes☆23Jan 30, 2026Updated 3 months ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- Static plotting for spatialdata☆80Updated this week
- ☆12Apr 26, 2020Updated 6 years ago
- ☆22Jan 10, 2025Updated last year
- ☆49Updated this week
- ☆13Apr 8, 2023Updated 3 years ago
- SimTriplet: PyTorch Implementation☆27Mar 12, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆53Aug 11, 2025Updated 9 months ago
- Building Explanations through a LocaLly AccuraTe Rule EXtractor☆13May 11, 2026Updated last week
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 8 months ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- An introduction to OME-Zarr for big bioimaging data☆26Updated this week
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Apr 28, 2026Updated 3 weeks ago
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 9 months ago