Cell level integrated analysis of tissue histology and spatial transcriptomics
☆32Oct 6, 2025Updated 10 months ago
Alternatives and similar repositories for Thor
Users that are interested in Thor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆147Jun 3, 2025Updated last year
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- ☆24Jan 10, 2025Updated last year
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆21May 28, 2026Updated 2 months ago
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆16Apr 9, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 29, 2023Updated 2 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆68Mar 18, 2024Updated 2 years ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆35Nov 30, 2023Updated 2 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Single-cell Spatial Transcriptomics Imputation via Style Transfer☆22Jun 3, 2026Updated 2 months ago
- ☆28Jan 25, 2022Updated 4 years ago
- Spatial One☆31Oct 31, 2024Updated last year
- scType rewritten in python☆25Nov 7, 2024Updated last year
- ☆12Jun 11, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Apr 15, 2025Updated last year
- A Snakemake pipeline for Xenium data analysis.☆27Jul 22, 2026Updated 2 weeks ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆34Apr 9, 2025Updated last year
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆50Oct 22, 2025Updated 9 months ago
- Molecular analysis of pre-invasive lung cancer samples☆14Jan 18, 2019Updated 7 years ago
- ☆38Jan 22, 2026Updated 6 months ago
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- ☆13Sep 30, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Aug 3, 2026Updated last week
- ☆37Oct 22, 2025Updated 9 months ago
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆17Jun 26, 2026Updated last month
- Spatial and multiomic visualization and analysis library☆28Updated this week
- ☆37Oct 10, 2025Updated 10 months ago
- Early Accepted in MICCAI 2023☆12Jul 11, 2023Updated 3 years ago
- Automatically annotate cell types, consistently across samples.☆27Aug 3, 2026Updated last week
- ☆26Aug 24, 2023Updated 2 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆55Aug 11, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆143Feb 13, 2025Updated last year
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated 7 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 3 months ago
- Downloads and prepares public PDAC data for analysis, and provides some basic tools for this analysis.☆15Dec 2, 2025Updated 8 months ago
- ☆13Jun 6, 2024Updated 2 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆118Jun 9, 2025Updated last year