CaiGroup / seqFISH-PLUSLinks
☆52Updated 4 years ago
Alternatives and similar repositories for seqFISH-PLUS
Users that are interested in seqFISH-PLUS are comparing it to the libraries listed below
Sorting:
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆80Updated last year
- data for spacejam2☆17Updated 2 years ago
- ☆48Updated last week
- ☆45Updated 2 years ago
- Bayesian Analytics for Spatial Segmentation☆28Updated 3 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆87Updated 3 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆35Updated 10 months ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆47Updated last week
- ☆52Updated last year
- ☆14Updated 3 years ago
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- ☆16Updated 10 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆119Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- ☆35Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 2 months ago
- ☆49Updated 5 months ago
- overview of spatial datasets☆75Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 10 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆66Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆42Updated 3 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆42Updated 10 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆58Updated 6 months ago
- Code used to benchmark Xenium☆58Updated 11 months ago
- Software for processing and analyzing STARmap experiments.☆38Updated 5 years ago
- ☆28Updated last year