☆53Apr 1, 2021Updated 4 years ago
Alternatives and similar repositories for seqFISH-PLUS
Users that are interested in seqFISH-PLUS are comparing it to the libraries listed below
Sorting:
- Software for processing and analyzing STARmap experiments.☆38Aug 27, 2019Updated 6 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- ☆17Mar 18, 2025Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 4 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- ☆12Aug 16, 2022Updated 3 years ago
- Spatial omics analysis toolbox☆362Feb 12, 2026Updated last month
- Single-cell Hierarchical Poisson Factorization☆75Feb 14, 2026Updated last month
- MERFISH decoding software☆26Aug 16, 2025Updated 7 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Jul 1, 2024Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Aug 1, 2021Updated 4 years ago
- Spatially resolved transcriptomic analysis☆64Nov 17, 2022Updated 3 years ago
- ☆67Nov 6, 2024Updated last year
- ☆13Jan 16, 2019Updated 7 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- ☆21Jun 29, 2022Updated 3 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- ☆15Jul 26, 2023Updated 2 years ago
- Test genes for Spatial Variation☆183May 7, 2024Updated last year
- data for spacejam2☆18Aug 3, 2022Updated 3 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- overview of spatial datasets☆79Feb 19, 2024Updated 2 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Nov 18, 2024Updated last year
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆257Feb 9, 2026Updated last month
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆82Mar 5, 2022Updated 4 years ago
- ☆129Jun 10, 2022Updated 3 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated 9 months ago
- ☆13Feb 15, 2024Updated 2 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- splicing and feature maps for RBPs☆25Mar 11, 2026Updated last week
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 7 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆86Apr 13, 2021Updated 4 years ago
- ☆41Dec 4, 2023Updated 2 years ago