CaiGroup / seqFISH-PLUS
☆49Updated 3 years ago
Alternatives and similar repositories for seqFISH-PLUS:
Users that are interested in seqFISH-PLUS are comparing it to the libraries listed below
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆76Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆62Updated last year
- data for spacejam2☆17Updated 2 years ago
- ☆45Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆72Updated last year
- ☆45Updated last week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 8 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆87Updated 3 weeks ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- ☆34Updated 11 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆57Updated 4 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆61Updated 9 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆110Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 weeks ago
- Software for processing and analyzing STARmap experiments.☆36Updated 5 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆49Updated 9 months ago
- ☆53Updated 11 months ago
- ☆42Updated 3 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- Reproducing result from the paper☆33Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆44Updated 8 months ago
- ☆64Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆76Updated 3 weeks ago
- ☆15Updated 7 months ago
- Spatial Single-Cell Analysis Toolkit☆86Updated last month
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆35Updated this week