bwalker1 / NeST
☆13Updated last year
Alternatives and similar repositories for NeST:
Users that are interested in NeST are comparing it to the libraries listed below
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last year
- CAST package☆32Updated 5 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆15Updated 2 weeks ago
- ☆23Updated last month
- ☆20Updated last month
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 5 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year
- ☆26Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆12Updated 11 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆14Updated last week
- ☆19Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated 2 weeks ago
- ☆46Updated 2 weeks ago
- scTM: A package for topic modelling in transcriptomics data☆15Updated 10 months ago
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- ☆13Updated 2 years ago
- Code, data and analysis for moslin.☆12Updated 5 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- A set of files to do genomics analysis on python☆18Updated 3 months ago
- Camiel's scATAC-seq analysis pipeline☆11Updated 11 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 8 months ago
- ☆39Updated this week
- Python implementation of Gene Trajectory☆25Updated 6 months ago
- ☆20Updated this week
- ☆9Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 weeks ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆15Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- ☆20Updated 2 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆21Updated last month