☆13Nov 3, 2023Updated 2 years ago
Alternatives and similar repositories for NeST
Users that are interested in NeST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducible analyses for the NicheCompass manuscript☆14Updated this week
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 3 years ago
- ☆10Dec 4, 2023Updated 2 years ago
- ☆22Jan 6, 2024Updated 2 years ago
- Data analysis for the moscot-framework project☆25Feb 27, 2026Updated 6 months ago
- ☆18Mar 18, 2025Updated last year
- ☆16May 25, 2021Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆20Aug 29, 2023Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆19Mar 31, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆90Jul 4, 2026Updated last month
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 7 months ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- ☆13Aug 9, 2022Updated 4 years ago
- End-to-end analysis of spatial multi-omics data☆124Updated this week
- ☆13Feb 12, 2023Updated 3 years ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- ☆19Oct 4, 2022Updated 3 years ago
- Reproducibility notebooks for scPoli☆23May 5, 2023Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- ☆20Updated this week
- Micro DNA identification☆24Aug 5, 2021Updated 5 years ago
- Segmentation-free Analysis of In Situ Capture data☆14Jul 6, 2026Updated last month
- ☆10Nov 29, 2022Updated 3 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis for BICCN cross-species primary motor cortex project☆23Feb 13, 2024Updated 2 years ago
- ☆34Feb 25, 2025Updated last year
- A tool for spatial omics single-modal clustering, multi-modal clustering, slice alignment, cross-modal alignment, multi-modal alignment, …☆20May 6, 2026Updated 3 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago
- numpy/pandas/matplotlib及其数据科学包的使用教程☆21Dec 2, 2024Updated last year
- ☆11May 10, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated last month