MarioniLab / oor_benchmarkLinks
A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
☆13Updated last year
Alternatives and similar repositories for oor_benchmark
Users that are interested in oor_benchmark are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆23Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 10 months ago
- ☆12Updated 4 years ago
- ☆22Updated 6 months ago
- Difference in Intercellular Communication from scRNA-seq data☆24Updated 3 months ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 2 weeks ago
- Feature selection for preserving biological trajectories in single-cell data☆20Updated 8 months ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 4 months ago
- ☆13Updated 5 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- ☆10Updated 2 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- ☆17Updated last year
- scVI extension for unspliced RNA☆16Updated 8 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Updated 11 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- CiteFuse:☆28Updated 2 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated 2 years ago
- Vaeda method for computational doublet annotation☆18Updated this week
- cross-species analysis of cell identities, markers and regulations☆12Updated 6 months ago