A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
☆14Oct 21, 2024Updated last year
Alternatives and similar repositories for oor_benchmark
Users that are interested in oor_benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Sep 1, 2023Updated 2 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆61Nov 18, 2022Updated 3 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 3 years ago
- ☆62Apr 5, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-resolution Variational Inference☆23Jul 13, 2026Updated last week
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆61May 30, 2022Updated 4 years ago
- ☆27Apr 8, 2025Updated last year
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 11 years ago
- Feature selection for preserving biological trajectories in single-cell data☆22Jun 24, 2026Updated 3 weeks ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆33Jan 21, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Reproducibility notebooks for scPoli☆23May 5, 2023Updated 3 years ago
- Code used for muti cellular factor analysis☆18Dec 13, 2023Updated 2 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17May 22, 2024Updated 2 years ago
- ☆20Jul 13, 2026Updated last week
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated last week
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 5 months ago
- Latent Embedding Multivariate Regression☆102May 19, 2026Updated 2 months ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tools for analyzing Slide-seq data☆32Oct 30, 2023Updated 2 years ago
- ☆14Jan 24, 2024Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 4 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Tools for the analysis of heterogeneous tissues☆15Aug 24, 2022Updated 3 years ago
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆68Apr 22, 2026Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 8 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- kallisto index tag extractor☆19Jul 6, 2019Updated 7 years ago
- Splits fastq files evenly☆24Aug 19, 2020Updated 5 years ago
- ☆13Sep 30, 2024Updated last year
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago