Alternatives and similar repositories for SiGra

Users that are interested in SiGra are comparing it to the libraries listed below

• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 8 months ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆28Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 2 months ago
• jsxlei / scCLIP
  ☆29Updated last year
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆17Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆86Updated last year
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆21Updated 8 months ago
• zhaofangyuan98 / SDMBench
  ☆37Updated last year
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆62Updated 2 years ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆75Updated 3 weeks ago
• yhr91 / GEARS_misc
  ☆20Updated 8 months ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆73Updated 4 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆51Updated 6 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆67Updated last year
• zhanglabtools / STAligner
  STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
  ☆23Updated last year
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆62Updated last year
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆70Updated last week
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆66Updated 4 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆28Updated 10 months ago
• QuKunLab / MultiomeBenchmarking
  ☆47Updated 3 months ago
• mcgilldinglab / scCross
  A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…
  ☆15Updated 3 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆41Updated last year
• JinmiaoChenLab / GraphST
  ☆120Updated last year
• yhchen1123 / CoGO
  CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure
  ☆17Updated 8 months ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆44Updated 9 months ago
• OSU-BMBL / marsgt
  Multi-omics data analysis for rare population inference using single-cell graph transformer
  ☆19Updated 7 months ago
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated 3 months ago
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆58Updated last year