Single-cell spatial elucidation through image-augmented graph transformer
☆32Jul 7, 2023Updated 3 years ago
Alternatives and similar repositories for SiGra
Users that are interested in SiGra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Dec 8, 2023Updated 2 years ago
- Identify spatial domain☆92May 29, 2025Updated last year
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 3 years ago
- ☆12Apr 3, 2023Updated 3 years ago
- [ICML 2025] Code for SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics.☆21Nov 22, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆17May 15, 2026Updated 2 months ago
- ☆18Mar 18, 2025Updated last year
- ☆14Mar 11, 2025Updated last year
- ☆42Dec 4, 2023Updated 2 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆67Mar 18, 2024Updated 2 years ago
- [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analy…☆22May 9, 2026Updated 2 months ago
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆13Feb 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 6 months ago
- ☆162Mar 19, 2024Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- ☆22Feb 5, 2025Updated last year
- ☆17Dec 3, 2025Updated 7 months ago
- ☆47May 31, 2024Updated 2 years ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆25May 16, 2025Updated last year
- ☆168Dec 20, 2024Updated last year
- ☆15Jan 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Jul 13, 2023Updated 3 years ago
- Single-cell data analysis☆16May 24, 2026Updated last month
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆43Mar 30, 2025Updated last year
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- A combination of RoBERTa trained from scratch on masking histone modification patterns rather than the English language and XGBoost, pred…☆13Apr 22, 2021Updated 5 years ago
- ☆24Jul 9, 2025Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆37May 15, 2026Updated 2 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆67Mar 31, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PDD: Awesome Phenotypic Drug Discovery☆41Oct 17, 2025Updated 9 months ago
- ☆11Apr 1, 2024Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 2 years ago
- ☆11Dec 7, 2022Updated 3 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆92Jun 24, 2024Updated 2 years ago
- ☆23May 2, 2025Updated last year
- ☆13Sep 30, 2024Updated last year