uhlerlab / STACILinks
☆14Updated 2 years ago
Alternatives and similar repositories for STACI
Users that are interested in STACI are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆46Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆76Updated 3 years ago
- ☆63Updated 11 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆38Updated last year
- ☆135Updated last year
- ☆40Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆47Updated 2 years ago
- ☆15Updated 3 months ago
- ☆123Updated 3 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆61Updated last year
- ☆50Updated 2 weeks ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 7 months ago
- Spatial-Linked Alignment Tool☆88Updated 10 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 6 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆71Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆11Updated last month
- Code used to benchmark Xenium☆69Updated last year
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated 2 weeks ago
- ☆60Updated 2 years ago
- Identify spatial domain☆85Updated 4 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆33Updated 2 years ago
- overview of spatial datasets☆76Updated last year
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆85Updated last year
- domain adaptation of spatial and single-cell transcriptome☆27Updated last year
- UniCell Deconvolve Paper☆10Updated 2 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆61Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆56Updated this week