Alternatives and similar repositories for STACI:

Users that are interested in STACI are comparing it to the libraries listed below

• JinmiaoChenLab / SEDR
  ☆54Updated 5 months ago
• zhaofangyuan98 / SDMBench
  ☆33Updated 10 months ago
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆71Updated 3 years ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆37Updated last year
• QuKunLab / SPACEL
  ☆56Updated 8 months ago
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• JinmiaoChenLab / GraphST
  ☆112Updated last year
• JiangBioLab / DeepST
  Identify spatial domain
  ☆70Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆90Updated 3 weeks ago
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆17Updated last year
• ys-zong / conST
  conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
  ☆26Updated last year
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆45Updated last year
• almaan / her2st
  Her2 Breast Cancer Project
  ☆71Updated 2 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆63Updated 10 months ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆61Updated 2 years ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆26Updated 6 months ago
• TencentAILabHealthcare / scpDeconv
  ☆10Updated last year
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆56Updated last year
• fdu-wangfeilab / stDiff
  A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  ☆18Updated last year
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆85Updated 3 months ago
• TencentAILabHealthcare / spatialID
  ☆38Updated 2 years ago
• zhanglabtools / STAligner
  STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
  ☆23Updated last year
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆54Updated 9 months ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆74Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆34Updated 9 months ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 6 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆63Updated last year
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆39Updated this week
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆19Updated 6 months ago
• kpcoleman / miso
  ☆22Updated 3 months ago