uhlerlab / STACI
☆10Updated last year
Related projects ⓘ
Alternatives and complementary repositories for STACI
- ☆43Updated this week
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆29Updated 7 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆62Updated 2 years ago
- ☆25Updated 5 months ago
- ☆49Updated 3 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆36Updated last year
- domain adaptation of spatial and single-cell transcriptome☆24Updated last month
- Her2 Breast Cancer Project☆57Updated last year
- ☆91Updated 7 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆62Updated 6 months ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆24Updated 8 months ago
- ☆34Updated 11 months ago
- Identify spatial domain☆59Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆22Updated last year
- Spatial-Linked Alignment Tool☆79Updated 5 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆71Updated 5 months ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆16Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆58Updated last year
- ☆107Updated 2 years ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆16Updated 7 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 5 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- ☆94Updated last month
- ☆60Updated last year
- ☆34Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆67Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆46Updated last year
- overview of spatial datasets☆68Updated 8 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆105Updated 2 months ago
- ☆17Updated 2 months ago