Alternatives and similar repositories for STACI

Users that are interested in STACI are comparing it to the libraries listed below

• JinmiaoChenLab / SEDR
  ☆57Updated 7 months ago
• QuKunLab / SPACEL
  ☆58Updated 11 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆41Updated last year
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆72Updated 3 years ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆75Updated 3 weeks ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆67Updated last year
• JinmiaoChenLab / GraphST
  ☆120Updated last year
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆31Updated 2 years ago
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆46Updated 2 years ago
• zhaofangyuan98 / SDMBench
  ☆37Updated last year
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆62Updated 11 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆49Updated this week
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated 9 months ago
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆17Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated 3 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆63Updated 11 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 2 months ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆62Updated 2 years ago
• XLearning-SCU / scBridge
  ☆21Updated 10 months ago
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• fdu-wangfeilab / stDiff
  A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  ☆20Updated last year
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆29Updated last month
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated 11 months ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆76Updated 2 years ago
• QuKunLab / SpatialBenchmarking
  ☆121Updated 3 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆75Updated last year
• xryanglab / DeepLinc
  De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
  ☆17Updated 2 years ago
• dpeerlab / ENVI
  ☆48Updated last month
• TencentAILabHealthcare / spatialID
  ☆39Updated 2 years ago
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆57Updated last year