uhlerlab / STACILinks
☆10Updated last year
Alternatives and similar repositories for STACI
Users that are interested in STACI are comparing it to the libraries listed below
Sorting:
- ☆56Updated 6 months ago
- ☆36Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆41Updated last year
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆26Updated last year
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆20Updated last year
- ☆57Updated 10 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆92Updated 2 months ago
- Her2 Breast Cancer Project☆74Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆17Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆62Updated 11 months ago
- ☆39Updated last year
- ☆116Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆72Updated 3 years ago
- Identify spatial domain☆73Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆45Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆66Updated last year
- ☆12Updated 8 months ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 8 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆61Updated 2 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆24Updated 2 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆47Updated last week
- ☆24Updated 4 months ago
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆23Updated last year
- overview of spatial datasets☆75Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆56Updated last year
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆33Updated 2 years ago
- ☆18Updated last month
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆31Updated 2 years ago
- ☆119Updated 2 years ago