☆15Aug 9, 2023Updated 2 years ago
Alternatives and similar repositories for STACI
Users that are interested in STACI are comparing it to the libraries listed below
Sorting:
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆62Nov 10, 2023Updated 2 years ago
- ☆146Mar 19, 2024Updated last year
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- ☆31Aug 2, 2023Updated 2 years ago
- ☆13Feb 15, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆80Mar 5, 2022Updated 3 years ago
- ☆15Jun 27, 2025Updated 8 months ago
- ☆66Nov 6, 2024Updated last year
- ☆17Mar 18, 2025Updated 11 months ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- stPlus: reference-based enhancement of spatial transcriptomics☆20Jan 6, 2024Updated 2 years ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆10Jan 20, 2022Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Dec 11, 2025Updated 2 months ago
- BANKSY: spatial clustering☆137Oct 15, 2025Updated 4 months ago
- A VGAE-based model to infer transcription factor regulatory network☆28Jul 25, 2022Updated 3 years ago
- ☆35Sep 2, 2022Updated 3 years ago
- A deep model infers gene regulation networks from scRNA-seq data.☆12Aug 1, 2024Updated last year
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆39Jul 28, 2025Updated 7 months ago
- Domain adaptation framework for segmentation via reinforcement learning.☆11Oct 13, 2025Updated 4 months ago
- ☆27Feb 4, 2026Updated 3 weeks ago
- ☆14Apr 7, 2025Updated 10 months ago
- Echopype example notebooks☆14Updated this week
- COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This …☆13Nov 12, 2024Updated last year
- ☆40Nov 17, 2022Updated 3 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- A web-based, time-series visualizer for tracked segmented data.☆13Updated this week
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Apr 8, 2024Updated last year
- ☆11Apr 1, 2024Updated last year
- CAST package☆42Oct 26, 2024Updated last year
- Her2 Breast Cancer Project☆97Nov 27, 2022Updated 3 years ago
- ☆16Nov 5, 2024Updated last year
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated 7 months ago
- Stream Data from Databricks Directly to PowerBI, and CosmosDB!☆12Sep 25, 2018Updated 7 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆18Nov 18, 2025Updated 3 months ago
- Benchmark gene representations from different model families☆14May 29, 2025Updated 9 months ago