Alternatives and similar repositories for EVI:

Users that are interested in EVI are comparing it to the libraries listed below

• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 3 months ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆33Updated 3 years ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆15Updated 3 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 6 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 4 months ago
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated 10 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• gxiaolab / scAllele
  ☆33Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆19Updated 3 months ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated last year
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• soumelis-lab / ICELLNET
  ☆20Updated last year
• ajaynadig / TRADEtools
  ☆17Updated last month
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• wanglab-broad / CAST
  CAST package
  ☆34Updated 6 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆19Updated 4 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• liuqivandy / SpaGene
  ☆22Updated last year
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆24Updated last month
• qingnanl / gsdensity
  ☆9Updated 9 months ago
• AllonKleinLab / paper-data
  ☆20Updated this week
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated last month
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• dpeerlab / pdac-progression
  ☆10Updated 2 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 6 months ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 8 months ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆10Updated 6 months ago