jranek / EVILinks
Integrating temporal gene expression modalities for trajectory inference and disease prediction
☆10Updated 3 years ago
Alternatives and similar repositories for EVI
Users that are interested in EVI are comparing it to the libraries listed below
Sorting:
- scVI extension for unspliced RNA☆16Updated 5 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- ☆26Updated last year
- Code, data and analysis for moslin.☆15Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- Information-based dimensionality reduction☆29Updated 11 months ago
- ☆24Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- R and MATLAB scripts for MAGICAL☆11Updated last year
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 7 months ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆33Updated 6 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Toolbox of the Human Neural Organoid Cell Atlas☆27Updated last week
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- R package for generalized binary covariance decomposition.☆11Updated 4 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- ☆30Updated 6 months ago
- Python implementation of Gene Trajectory☆29Updated last year
- ☆40Updated this week
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last week