Integrating temporal gene expression modalities for trajectory inference and disease prediction
☆11Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for EVI
Users that are interested in EVI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 5 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆21Mar 31, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools which deal with multiple single cell measurements☆25May 28, 2026Updated last month
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- ☆18Mar 18, 2025Updated last year
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 4 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- ☆13Apr 27, 2022Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- ☆16Mar 8, 2024Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- ☆13Jul 18, 2025Updated last year
- CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data☆19May 7, 2022Updated 4 years ago
- Downloads and prepares public PDAC data for analysis, and provides some basic tools for this analysis.☆15Dec 2, 2025Updated 7 months ago
- ☆15Feb 28, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Jan 16, 2026Updated 6 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆26Feb 26, 2026Updated 4 months ago
- ☆43Jan 12, 2026Updated 6 months ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated 2 years ago
- A tool for single-cell data analysis.☆42Sep 24, 2025Updated 9 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆59Jan 29, 2026Updated 5 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆101Feb 11, 2026Updated 5 months ago
- ☆36Oct 10, 2025Updated 9 months ago
- Feature selection for preserving biological trajectories in single-cell data☆22Jun 24, 2026Updated 3 weeks ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- ☆21Dec 23, 2024Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago