Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
☆19Dec 5, 2024Updated last year
Alternatives and similar repositories for spatial-factorization-py
Users that are interested in spatial-factorization-py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nonnegative spatial factorization for multivariate count data☆66Jun 28, 2023Updated 3 years ago
- ☆13Jan 29, 2021Updated 5 years ago
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- ☆18Mar 18, 2025Updated last year
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆32Sep 30, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Jul 7, 2026Updated 2 weeks ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- MERFISH decoding software☆27Aug 16, 2025Updated 11 months ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- ☆14Mar 17, 2022Updated 4 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆36Jun 14, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 5 months ago
- Tools for the analysis of heterogeneous tissues☆15Aug 24, 2022Updated 3 years ago
- みんなのRcpp☆14Mar 25, 2020Updated 6 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆68Mar 18, 2025Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity (now archived). Pl…☆20May 13, 2026Updated 2 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- ☆17Apr 15, 2025Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆80May 24, 2024Updated 2 years ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 4 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 5 months ago
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 3 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- ☆20Jan 6, 2024Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆73Apr 12, 2024Updated 2 years ago
- Single Cell Analysis Operations☆17Jun 24, 2026Updated 3 weeks ago