willtownes / spatial-factorization-py
Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
☆13Updated last month
Related projects ⓘ
Alternatives and complementary repositories for spatial-factorization-py
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last month
- CAST package☆25Updated 3 weeks ago
- Parse ArchR arrow files to anndata h5ad☆14Updated 11 months ago
- scVI extension for unspliced RNA☆16Updated 3 weeks ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆14Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆28Updated this week
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated 10 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 10 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆12Updated 10 months ago
- ☆17Updated last year
- ☆19Updated 2 years ago
- ☆26Updated 10 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆21Updated 2 months ago
- ☆17Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆20Updated 2 months ago
- Neural Crest Fate Decisions☆10Updated 5 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated last month
- Spatial reconstruction of dissociated single-cell data☆17Updated 10 months ago
- Code, data and analysis for moslin.☆11Updated last month
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated 4 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 2 years ago
- A set of files to do genomics analysis on python☆18Updated 5 months ago