willtownes / spatial-factorization-pyLinks
Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
☆16Updated 9 months ago
Alternatives and similar repositories for spatial-factorization-py
Users that are interested in spatial-factorization-py are comparing it to the libraries listed below
Sorting:
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- scVI extension for unspliced RNA☆16Updated 4 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 11 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Test genes for Spatial Variation☆14Updated 9 months ago
- ☆29Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- ☆22Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 5 months ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Updated 4 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 8 months ago
- Code, data and analysis for moslin.☆14Updated 11 months ago
- CAST package☆40Updated 10 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- ☆26Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated last month
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ☆21Updated 3 years ago
- ☆22Updated 2 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated last year
- ☆13Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 9 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆60Updated last month