willtownes / spatial-factorization-pyLinks
Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
☆16Updated 8 months ago
Alternatives and similar repositories for spatial-factorization-py
Users that are interested in spatial-factorization-py are comparing it to the libraries listed below
Sorting:
- scVI extension for unspliced RNA☆16Updated 3 months ago
- ☆29Updated 3 years ago
- ☆14Updated 5 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated 11 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 10 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- CAST package☆40Updated 10 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Test genes for Spatial Variation☆14Updated 8 months ago
- ☆26Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 2 weeks ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 4 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Code, data and analysis for moslin.☆14Updated 10 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 7 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- ☆30Updated 3 months ago
- Spatial One☆28Updated 10 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month