willtownes / spatial-factorization-py
Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
☆16Updated 4 months ago
Alternatives and similar repositories for spatial-factorization-py:
Users that are interested in spatial-factorization-py are comparing it to the libraries listed below
- Test genes for Spatial Variation☆14Updated 4 months ago
- CAST package☆34Updated 5 months ago
- ☆28Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Code, data and analysis for moslin.☆12Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 6 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 3 months ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- SuperCell for Cytometry data☆12Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated 2 weeks ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆17Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 2 weeks ago
- ☆21Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆17Updated 6 months ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- scVI extension for unspliced RNA☆16Updated 3 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 7 months ago
- ☆21Updated 2 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 8 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated 2 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆10Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago