emdann / ST_simulationLinks
☆13Updated 5 years ago
Alternatives and similar repositories for ST_simulation
Users that are interested in ST_simulation are comparing it to the libraries listed below
Sorting:
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 11 months ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- deconvolution for RNAseq and bisulfite sequencing☆11Updated 5 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Computational pipeline to process EasySci-RNA data.☆22Updated 2 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆23Updated 3 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆24Updated 3 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated last week
- ☆29Updated 2 years ago
- single-cell Nucleosome Methylation Transcription☆15Updated 7 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Updated 2 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- ☆39Updated 4 years ago
- Parse ArchR arrow files to anndata h5ad☆16Updated 2 years ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆26Updated 6 months ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24Updated 8 months ago
- ☆23Updated 3 months ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Updated 9 months ago