Alternatives and similar repositories for SDMBench

Users that are interested in SDMBench are comparing it to the libraries listed below

• JinmiaoChenLab / SEDR
  ☆58Updated 7 months ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆62Updated 2 years ago
• JinmiaoChenLab / GraphST
  ☆120Updated last year
• zhanglabtools / STAligner
  STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
  ☆23Updated last year
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆73Updated 3 years ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆75Updated 3 weeks ago
• QuKunLab / SPACEL
  ☆58Updated 11 months ago
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆46Updated 2 years ago
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆41Updated last year
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆17Updated last year
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆62Updated last year
• ys-zong / conST
  conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
  ☆26Updated last year
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆57Updated last year
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆21Updated 8 months ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆75Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆67Updated last year
• biomed-AI / ConGI
  ☆13Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated 3 months ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆86Updated 6 months ago
• uhlerlab / STACI
  ☆12Updated last year
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated 8 months ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago
• hongleir / SpaceFlow
  ☆29Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 2 months ago
• TencentAILabHealthcare / scpDeconv
  ☆10Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated 11 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆29Updated last month
• cs-wangbo / Spatial-MGCN
  ☆19Updated last year
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆73Updated 4 months ago