ElementoLab / utagLinks
☆41Updated last week
Alternatives and similar repositories for utag
Users that are interested in utag are comparing it to the libraries listed below
Sorting:
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- ☆52Updated 3 months ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 11 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ☆53Updated 4 years ago
- ☆44Updated 3 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Updated 6 months ago
- ☆35Updated last week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39Updated last year
- CAST package☆42Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- ☆59Updated 3 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆116Updated 2 weeks ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆29Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 9 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆25Updated last week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52Updated 3 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago