ElementoLab / utag
☆34Updated last year
Alternatives and similar repositories for utag:
Users that are interested in utag are comparing it to the libraries listed below
- ☆46Updated last week
- ☆31Updated 3 months ago
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆57Updated 5 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 2 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆14Updated last month
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 6 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆77Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆35Updated 4 months ago
- ☆26Updated 6 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆48Updated 2 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆45Updated 2 years ago
- CAST package☆33Updated 5 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 8 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 8 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆18Updated last year
- Python package for reading imaging mass cytometry (IMC) files☆14Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆38Updated this week
- A package for the analysis of Imaging Mass Cytometry data☆13Updated last month
- ☆25Updated 5 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated this week
- Interactive applications of stlearn☆16Updated last year
- ☆16Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- Image Mass Cytometry analysis pipeline☆25Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated 11 months ago