Alternatives and similar repositories for utag

Users that are interested in utag are comparing it to the libraries listed below

• AI4SCR / ATHENA
  ☆33Updated 4 months ago
• dpeerlab / ENVI
  ☆48Updated last week
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆42Updated 10 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆51Updated 3 months ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆14Updated 3 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated last month
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆80Updated last year
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆35Updated last year
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆23Updated 9 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆91Updated last week
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆20Updated this week
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆15Updated last week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆37Updated 6 months ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆18Updated 4 months ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 8 months ago
• scverse / spatialdata-notebooks
  ☆53Updated last week
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 11 months ago
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆58Updated 6 months ago
• HiDiHlabs / ssam
  ☆28Updated 7 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆26Updated 5 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 7 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆42Updated 3 years ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆47Updated last week
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• wanglab-broad / CAST
  CAST package
  ☆38Updated 7 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆79Updated last month
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated 2 months ago
• nolanlab / CODEX
  Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
  ☆47Updated 3 years ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆28Updated last week