Differential spatial enrichment across conditions
☆27Oct 1, 2025Updated 7 months ago
Alternatives and similar repositories for quiche
Users that are interested in quiche are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate a spatial catalogue from multiplexed imaging data☆19Jun 12, 2025Updated 11 months ago
- Feature selection for preserving biological trajectories in single-cell data☆22May 29, 2025Updated 11 months ago
- ☆17Mar 18, 2025Updated last year
- ☆37Apr 21, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆21May 18, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆31Sep 15, 2025Updated 8 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Apr 29, 2026Updated 3 weeks ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆131May 8, 2026Updated 2 weeks ago
- ☆34Oct 10, 2025Updated 7 months ago
- ☆20May 1, 2023Updated 3 years ago
- ☆28Jan 31, 2026Updated 3 months ago
- Tutorials for learning scverse☆21May 18, 2026Updated last week
- ☆31Jun 24, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆32Jan 3, 2025Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆130Updated this week
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Latent Embedding Multivariate Regression☆101May 19, 2026Updated last week
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- Analyzing cellular niches in spatial transcriptomics data☆35Nov 18, 2024Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆49Nov 8, 2025Updated 6 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆173May 18, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆24Aug 20, 2024Updated last year
- Profile purification of single-cell spatial transcriptomics data☆44May 18, 2026Updated last week
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Oct 30, 2020Updated 5 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 3 months ago
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Jan 22, 2026Updated 4 months ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆32Aug 11, 2022Updated 3 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆279Updated this week
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆20Apr 9, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated last year
- ☆15Sep 12, 2023Updated 2 years ago
- ☆95May 15, 2026Updated last week
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- A scheduler to manage a multi tool dual arm robot while avoiding arm-to-arm collisions; considering complex side constraints; and optimiz…☆11Jul 6, 2021Updated 4 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆17May 11, 2023Updated 3 years ago