maiziezhoulab / BenchmarkSTLinks
Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
☆21Updated 9 months ago
Alternatives and similar repositories for BenchmarkST
Users that are interested in BenchmarkST are comparing it to the libraries listed below
Sorting:
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated 11 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆37Updated last year
- ☆54Updated 2 weeks ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- ☆30Updated 2 months ago
- ☆10Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- ☆45Updated 2 months ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆37Updated 4 months ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆31Updated 6 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 weeks ago
- Python implementation of Gene Trajectory☆27Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆33Updated 2 months ago
- ☆14Updated 3 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆22Updated 4 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆69Updated last year
- ☆21Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆41Updated 2 months ago
- ☆60Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 3 months ago
- ☆21Updated last year
- ☆24Updated 6 months ago
- ☆44Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- CAST package☆40Updated 11 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- ☆40Updated this week