scverse / scvi-tools-skeletonLinks
Template repository for creating novel models with scvi-tools
☆20Updated 3 years ago
Alternatives and similar repositories for scvi-tools-skeleton
Users that are interested in scvi-tools-skeleton are comparing it to the libraries listed below
Sorting:
- Spatial reconstruction of dissociated single-cell data☆19Updated 2 years ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- Distributed single-cell data analysis.☆36Updated last week
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Updated 2 weeks ago
- a dataloader to work with large single cell datasets from lamindb☆34Updated this week
- ☆90Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆85Updated 2 weeks ago
- Simple scVI implementation☆12Updated 3 weeks ago
- Multimodal Data (.h5mu) implementation for Python☆107Updated last week
- ☆15Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- ☆47Updated 6 months ago
- ☆38Updated last month
- single cell foundation model for Gene network inference and more☆19Updated 2 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated 8 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆59Updated this week
- ☆62Updated 8 months ago
- ☆62Updated last year
- Single-cell multi-omics integration using Optimal Transport☆50Updated 5 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- Python implementation of the Slingshot pseudotime algorithm☆69Updated 3 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- ☆48Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Updated this week
- ☆101Updated 2 years ago
- Models and datasets for perturbational single-cell omics☆171Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- Python client for the OmniPath web service☆57Updated 7 months ago