Template repository for creating novel models with scvi-tools
☆20Jan 18, 2023Updated 3 years ago
Alternatives and similar repositories for scvi-tools-skeleton
Users that are interested in scvi-tools-skeleton are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jul 8, 2022Updated 4 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- A library for bayesian variable selection☆31Jan 24, 2025Updated last year
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Distributed single-cell data analysis.☆40Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,666Updated this week
- Cookiecutter template for scverse☆89Updated this week
- Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.☆11May 22, 2024Updated 2 years ago
- ☆70Jul 21, 2023Updated 3 years ago
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆19Oct 10, 2024Updated last year
- Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.☆15May 4, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆68Jul 8, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Notebooks used in scvi-tools tutorials☆64Updated this week
- Models and datasets for perturbational single-cell omics☆179Aug 19, 2022Updated 3 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- ☆12Oct 23, 2023Updated 2 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated last year
- ☆62Apr 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19Feb 11, 2022Updated 4 years ago
- Archetypal Analysis network (AAnet)☆41Jan 30, 2025Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- ☆12Aug 21, 2025Updated 11 months ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Aug 11, 2022Updated 3 years ago
- Information Constraints on Auto-Encoding Variational Bayes☆11May 24, 2018Updated 8 years ago
- ☆17Oct 29, 2025Updated 8 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆100Jul 13, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- muon is a multimodal omics Python framework☆273Updated this week
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated last year
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Contextual Bandit Spectral Representation Learner☆13Oct 25, 2022Updated 3 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 5 months ago
- ☆18Mar 18, 2025Updated last year
- ☆16May 6, 2026Updated 2 months ago