Alternatives and similar repositories for scvi-tools-skeleton:

Users that are interested in scvi-tools-skeleton are comparing it to the libraries listed below

• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• theislab / multicpa
  ☆14Updated 2 years ago
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆26Updated 3 years ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆41Updated last month
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆54Updated last week
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆15Updated 6 months ago
• lilab-bcb / harmony-pytorch
  ☆51Updated this week
• AllonKleinLab / cospar
  ☆26Updated last year
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆29Updated this week
• theislab / scTab
  ☆57Updated 6 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• theislab / prophet
  ☆29Updated this week
• bioFAM / mofax
  Work with trained factor models in Python
  ☆31Updated 4 months ago
• altoslabs / perturbench
  ☆23Updated 2 months ago
• ratschlab / pmvae
  Code for pmVAE model, seen in ICML CompBio '21
  ☆12Updated 11 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 10 months ago
• PeterZZQ / CellPath
  ☆20Updated 2 years ago
• YosefLab / totalVI_reproducibility
  ☆16Updated 2 years ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆63Updated last month
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 5 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆67Updated 2 years ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆29Updated 2 weeks ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆24Updated 2 years ago
• BIMSBbioinfo / bavaria
  Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…
  ☆13Updated last year
• scverse / simple-scvi
  Simple scVI implementation
  ☆11Updated 2 weeks ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated 2 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 3 months ago