scverse / scvi-tools-skeleton
Template repository for creating novel models with scvi-tools
☆19Updated 2 years ago
Alternatives and similar repositories for scvi-tools-skeleton:
Users that are interested in scvi-tools-skeleton are comparing it to the libraries listed below
- ☆13Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- Simple scVI implementation☆10Updated last week
- ☆51Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆54Updated this week
- single cell foundation model for Gene network inference and more☆15Updated 4 months ago
- ☆56Updated 5 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆44Updated 3 weeks ago
- Python implementation of the Slingshot pseudotime algorithm☆58Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- ☆45Updated 2 years ago
- Test genes for Spatial Variation☆14Updated last month
- A python package for chromVAR☆27Updated last year
- End-to-end analysis of spatial multi-omics data☆39Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆62Updated last year
- ☆26Updated last year
- ☆20Updated 2 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆29Updated 7 months ago
- ☆51Updated 10 months ago
- cTPnet Package☆24Updated 2 years ago
- ACTIONet single-cell analysis framework☆38Updated 5 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆57Updated 3 months ago
- spatial transcriptome, single cell☆67Updated last year
- ☆39Updated this week
- Distributed single-cell data analysis.☆27Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆30Updated this week
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- Single cell omics biology annotations☆48Updated 3 weeks ago
- ☆28Updated last month