Alternatives and similar repositories for segmentation

Users that are interested in segmentation are comparing it to the libraries listed below

• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆22Updated last week
• wanglab-broad / CAST
  CAST package
  ☆40Updated 7 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆18Updated last year
• xzhoulab / SRTsim
  ☆14Updated 3 months ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆16Updated 6 months ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 9 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆25Updated 5 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆22Updated last month
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 6 months ago
• marcovito / sma
  ☆13Updated last year
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆35Updated 2 years ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated 9 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• theislab / scTab
  ☆59Updated 9 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• damienArnol / svca
  ☆13Updated 6 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆32Updated 2 weeks ago
• phipsonlab / SuperCellCyto
  SuperCell for Cytometry data
  ☆12Updated last year
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆25Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆14Updated 8 months ago
• quon-titative-biology / scProjection
  Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection
  ☆13Updated last year
• coskunlab / scSpaMet
  ☆12Updated last year
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 8 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆30Updated 2 months ago