yozhikoff / segmentation

Related projects ⓘ

Alternatives and complementary repositories for segmentation

• marcovito / sma
  ☆12Updated last year
• wanglab-broad / CAST
  CAST package
  ☆23Updated 2 weeks ago
• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• broadchenf / Slideseq
  ☆12Updated 5 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated 9 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆20Updated 2 months ago
• sqjin / scEpath
  An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
  ☆16Updated 3 years ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated 5 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆23Updated 3 years ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆23Updated last year
• TencentAILabHealthcare / pysodb
  ☆22Updated 10 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆18Updated 3 weeks ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated 7 months ago
• xzhoulab / SRTsim
  ☆11Updated last month
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 2 weeks ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆12Updated last year
• theislab / multicpa
  ☆13Updated 2 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆19Updated 3 months ago
• almaan / eggplant
  ☆20Updated 2 years ago
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated 2 months ago
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆27Updated 5 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆23Updated last month
• yuanzhiyuan / SODB_analysis
  ☆10Updated last year
• damienArnol / svca
  ☆13Updated 5 years ago
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆13Updated last year
• BiomedicalMachineLearning / Spacell
  ☆25Updated 4 years ago
• tabdelaal / SIRV
  Spatial RNA velocity
  ☆10Updated last month
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆19Updated last year
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆28Updated 10 months ago