yozhikoff / segmentation

Related projects ⓘ

Alternatives and complementary repositories for segmentation

• broadchenf / Slideseq
  ☆12Updated 5 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated 10 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆19Updated last week
• theislab / multicpa
  ☆13Updated 2 years ago
• TencentAILabHealthcare / pysodb
  ☆22Updated 10 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆28Updated this week
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆21Updated this week
• xzhoulab / SRTsim
  ☆11Updated 2 months ago
• viannegao / ChromaFold
  ☆17Updated last month
• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆28Updated this week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆24Updated this week
• theislab / prophet
  ☆25Updated 3 months ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆23Updated 2 years ago
• wanglab-broad / CAST
  CAST package
  ☆25Updated 3 weeks ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆12Updated 10 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆20Updated 2 months ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated 5 months ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated last month
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 2 months ago
• damienArnol / svca
  ☆13Updated 5 years ago
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆23Updated 3 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆27Updated this week
• shenorrLabTRDF / TimeAx
  Multiple trajectory alignment of time-series data
  ☆10Updated last year
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated 7 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆20Updated 4 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆30Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆23Updated 2 years ago