End-to-end pipeline for segmenting cell nuclei on histology slides
☆16Jul 19, 2022Updated 4 years ago
Alternatives and similar repositories for segmentation
Users that are interested in segmentation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of regular and multiscale parametric t-SNE in pytorch☆27Sep 15, 2022Updated 4 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- ☆15Jan 24, 2024Updated 2 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆14Jan 16, 2019Updated 7 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- Visualizing the space of chemical reactions with the parametric (learnable) t-SNE.☆16May 5, 2022Updated 4 years ago
- ☆21Oct 15, 2026Updated 2 weeks ago
- Quick pre-QC knee plots for barcode based scRNAseq data☆13Dec 8, 2018Updated 7 years ago
- Pipeline for processing of GoT-ChA genotyping data and downstream analysis☆16Mar 17, 2025Updated last year
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- ☆13May 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- ☆12Aug 6, 2024Updated 2 years ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆40Sep 20, 2022Updated 4 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pan-cancer quantitative histopathology analysis using deep learning☆12Mar 1, 2022Updated 4 years ago
- MERFISH decoding software☆30Aug 16, 2025Updated last year
- ☆11Feb 18, 2019Updated 7 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- ☆74May 28, 2025Updated last year
- ☆16Mar 8, 2024Updated 2 years ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆126May 26, 2026Updated 5 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated last year
- ☆13Nov 20, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆42Oct 18, 2026Updated last week
- ☆30Oct 4, 2024Updated 2 years ago
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 8 months ago
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 6 months ago
- ☆28May 22, 2025Updated last year