damienArnol / svcaLinks
☆13Updated 6 years ago
Alternatives and similar repositories for svca
Users that are interested in svca are comparing it to the libraries listed below
Sorting:
- ☆27Updated 7 months ago
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- CAST package☆40Updated 7 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- Test genes for Spatial Variation☆14Updated 5 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- ☆18Updated 2 weeks ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 7 months ago
- R package for normalisation of spatial transcriptomics data☆10Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated this week
- ☆19Updated 5 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 10 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆11Updated last month
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆10Updated last year
- ☆29Updated 3 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆27Updated last week
- Spatial One☆28Updated 7 months ago
- ☆35Updated 2 weeks ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- Tools to handle IMC data☆23Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated last month
- An R package for handling and analysing imaging mass cytometry data☆26Updated last week
- ☆21Updated 2 years ago
- ☆19Updated 2 weeks ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆13Updated 2 years ago
- Identification of spatial homogeneous regions☆21Updated 4 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆19Updated last year