damienArnol / svca
☆13Updated 6 years ago
Alternatives and similar repositories for svca:
Users that are interested in svca are comparing it to the libraries listed below
- CAST package☆34Updated 5 months ago
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 4 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆26Updated 9 months ago
- Test genes for Spatial Variation☆14Updated 4 months ago
- ☆26Updated 6 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated this week
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆17Updated 6 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆18Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆53Updated 3 weeks ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆10Updated 2 months ago
- ☆47Updated 3 weeks ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆48Updated 2 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆9Updated 6 months ago
- ☆17Updated this week
- ☆21Updated 2 years ago
- Identification of spatial homogeneous regions☆20Updated 3 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆10Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆34Updated 2 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 3 months ago
- Tools to handle IMC data☆23Updated 3 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last month
- ☆21Updated 4 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆11Updated 4 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆68Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆25Updated this week