Alternatives and similar repositories for SODB_analysis

Users that are interested in SODB_analysis are comparing it to the libraries listed below

• TencentAILabHealthcare / pysodb

  View on GitHub
  ☆28Jan 4, 2024Updated 2 years ago
• rnabioco / scraps

  View on GitHub
  Single Cell RNA PolyA Site Discovery
  ☆11Jan 28, 2026Updated 2 weeks ago
• yuanzhiyuan / MENDER

  View on GitHub
  ☆15Jan 6, 2024Updated 2 years ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA

  View on GitHub
  ☆21Dec 23, 2024Updated last year
• stevexniu / spots

  View on GitHub
  Statistical analysis for spatial omics data
  ☆11Jul 30, 2022Updated 3 years ago
• vitkl / cell2location_paper

  View on GitHub
  Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics
  ☆15Nov 26, 2022Updated 3 years ago
• zhipenglu / CRSSANT

  View on GitHub
  Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
  ☆12Mar 7, 2024Updated last year
• TencentAILabHealthcare / SOTIP

  View on GitHub
  ☆10Nov 29, 2022Updated 3 years ago
• mardzix / bcd_nano_CUTnTag

  View on GitHub
  ☆12Nov 20, 2023Updated 2 years ago
• RCHENLAB / scGPT_fineTune_protocol

  View on GitHub
  ☆18Jul 22, 2025Updated 6 months ago
• whwanglab / PDAC

  View on GitHub
  ☆13Apr 27, 2022Updated 3 years ago
• elo073 / 5loclung

  View on GitHub
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆12Dec 27, 2023Updated 2 years ago
• wanglabtongji / STRIDE

  View on GitHub
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Jan 23, 2024Updated 2 years ago
• wanglabtongji / SpaceScanner

  View on GitHub
  Scanner of specific spatial patterns in tissues
  ☆14Jul 15, 2022Updated 3 years ago
• coskunlab / scSpaMet

  View on GitHub
  ☆12Sep 29, 2023Updated 2 years ago
• biomed-AI / ConGI

  View on GitHub
  ☆13Feb 15, 2024Updated 2 years ago
• mckellardw / STRS

  View on GitHub
  Suite of analysis tools for spatial total RNA-sequencing
  ☆12Aug 10, 2023Updated 2 years ago
• sdentro / copykat_pipeline

  View on GitHub
  ☆13Jan 24, 2024Updated 2 years ago
• NCICCGPO / scATAC-Manuscript

  View on GitHub
  ☆14Sep 13, 2024Updated last year
• nicholasmfraser / rbiorxiv

  View on GitHub
  R client for the bioRxiv API (https://api.biorxiv.org/)
  ☆15May 18, 2021Updated 4 years ago
• omicidx / omicidx-parsers

  View on GitHub
  Exposing public genomics data via computable and searchable metadata
  ☆13Jul 9, 2024Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis

  View on GitHub
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆17Dec 1, 2024Updated last year
• dbrg77 / ISSAAC-seq

  View on GitHub
  ☆19Mar 8, 2023Updated 2 years ago
• marcovito / sma

  View on GitHub
  ☆15Aug 17, 2023Updated 2 years ago
• snap-stanford / stellar

  View on GitHub
  ☆71Jan 18, 2023Updated 3 years ago
• maiziezhoulab / BenchmarkST

  View on GitHub
  Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
  ☆23Dec 19, 2024Updated last year
• ma-compbio / Fast-Higashi

  View on GitHub
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆20Sep 12, 2023Updated 2 years ago
• aertslab / scATAC-seq_benchmark

  View on GitHub
  ☆19Dec 15, 2023Updated 2 years ago
• Su-informatics-lab / DSTG

  View on GitHub
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Aug 11, 2022Updated 3 years ago
• yangzi4 / iNMF

  View on GitHub
  Source code for integrative nonnegative matrix factorization
  ☆19Jul 12, 2018Updated 7 years ago
• AmandaKedaigle / OrganoidAtlas

  View on GitHub
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Mar 16, 2022Updated 3 years ago
• xzhoulab / SRTsim

  View on GitHub
  ☆17Mar 18, 2025Updated 10 months ago
• jfnavarro / st_analysis

  View on GitHub
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Jun 11, 2021Updated 4 years ago
• alexandrovteam / pySM

  View on GitHub
  Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry
  ☆20Nov 15, 2016Updated 9 years ago
• smithlabcode / piranha

  View on GitHub
  Piranha is a peak-caller for CLIP- and RIP-seq data
  ☆20Feb 7, 2018Updated 8 years ago
• shooshtarilab / TMExplorer

  View on GitHub
  A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
  ☆19Jul 28, 2025Updated 6 months ago
• romain-lopez / DestVI-reproducibility

  View on GitHub
  Reproducing the experiments of the DestVI paper
  ☆22Feb 9, 2022Updated 4 years ago
• zwj-tina / neoadjuvant-treatment-of-NSCLC

  View on GitHub
  ☆30Jan 3, 2025Updated last year
• karthikj89 / humanpdac

  View on GitHub
  single cell analysis of treatment naive and treated human PDAC
  ☆25May 27, 2022Updated 3 years ago