Alternatives and similar repositories for SODB_analysis

Users that are interested in SODB_analysis are comparing it to the libraries listed below

• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated last year
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 3 years ago
• sdentro / copykat_pipeline
  ☆13Updated last year
• pqiu / cooccurrence_clustering
  ☆13Updated 5 years ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 5 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 11 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• datapplab / AutoClass
  ☆44Updated 3 years ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆23Updated 3 weeks ago
• soumelis-lab / ICELLNET
  ☆20Updated last month
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• Center-for-Health-Data-Science / multiDGD
  ☆26Updated 3 months ago
• marcovito / sma
  ☆13Updated 2 years ago
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆21Updated 2 months ago
• karthikj89 / humanpdac
  single cell analysis of treatment naive and treated human PDAC
  ☆23Updated 3 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆38Updated 4 years ago
• theislab / scTab
  ☆59Updated 11 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 11 months ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 5 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆22Updated 3 months ago
• SchubertLab / mvTCR
  ☆54Updated 9 months ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated 3 months ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 9 months ago