☆12Mar 22, 2023Updated 3 years ago
Alternatives and similar repositories for SODB_analysis
Users that are interested in SODB_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Jan 4, 2024Updated 2 years ago
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- ☆11Nov 29, 2022Updated 3 years ago
- ☆24Jan 6, 2024Updated 2 years ago
- ☆13Feb 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 13, 2024Updated 2 years ago
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated 2 years ago
- Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)☆13Mar 7, 2024Updated 2 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Sep 30, 2026Updated last month
- ☆16Oct 29, 2025Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- ☆10Oct 7, 2024Updated 2 years ago
- ☆12Oct 28, 2025Updated last year
- Statistical analysis for spatial omics data☆12Jul 30, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆23Dec 23, 2024Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- ☆73Jan 18, 2023Updated 3 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- ☆11Aug 3, 2021Updated 5 years ago
- Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics☆15Nov 26, 2022Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 3 months ago
- R client for the bioRxiv API (https://api.biorxiv.org/)☆16May 18, 2021Updated 5 years ago
- ☆22Jul 22, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month
- GPU-accelerated evaluation of perturbation prediction models☆36Updated this week
- ☆19Mar 8, 2023Updated 3 years ago
- Environment modules for the ILRI, Nairobi HPC cluster☆11Jun 9, 2026Updated 4 months ago
- public production version of sequin to share with the public☆11Jun 12, 2026Updated 4 months ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 9 months ago
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 10 months ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆39May 15, 2026Updated 5 months ago
- ☆13Nov 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- ☆18Mar 18, 2025Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆23May 19, 2025Updated last year
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 5 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- ☆15Jan 24, 2024Updated 2 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago