Alternatives and similar repositories for SODB_analysis

Users that are interested in SODB_analysis are comparing it to the libraries listed below

• TencentAILabHealthcare / pysodb
  ☆25Updated last year
• lanagarmire / Single-cell-drug-repositioning
  ☆17Updated last year
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 9 months ago
• datapplab / AutoClass
  ☆43Updated 3 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆42Updated last year
• sdentro / copykat_pipeline
  ☆13Updated last year
• pqiu / cooccurrence_clustering
  ☆14Updated 5 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 9 months ago
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆22Updated 6 months ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• JiangBioLab / DeepCCI
  ☆21Updated 3 years ago
• qiaochen / VeloAE
  Low-dimensional Projection of Single Cell Velocity
  ☆28Updated 3 years ago
• Roy-lab / scMTNI
  ☆30Updated 4 months ago
• soumelis-lab / ICELLNET
  ☆21Updated 4 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 3 months ago
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆19Updated last year
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆27Updated last year
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago
• tanlabcode / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆43Updated last month
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 3 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• MedicalGenomicsLab / deconvolution_benchmarking
  ☆21Updated last year
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• theislab / cross_system_integration
  ☆13Updated 3 months ago