Alternatives and similar repositories for SODB_analysis

Users that are interested in SODB_analysis are comparing it to the libraries listed below

• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated last year
• datapplab / AutoClass
  ☆44Updated 3 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 3 years ago
• theislab / scTab
  ☆59Updated 10 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• Roy-lab / scMTNI
  ☆27Updated 3 weeks ago
• MedicalGenomicsLab / deconvolution_benchmarking
  ☆21Updated last year
• pqiu / cooccurrence_clustering
  ☆13Updated 5 years ago
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 2 years ago
• qiaochen / VeloAE
  Low-dimensional Projection of Single Cell Velocity
  ☆28Updated 2 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 10 months ago
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 2 years ago
• sdentro / copykat_pipeline
  ☆13Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 2 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 2 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 10 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 4 months ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆13Updated 2 years ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆33Updated 4 months ago
• wycwycpku / RSCORE
  ☆26Updated 3 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆30Updated 7 months ago
• yzf072 / spaTrack
  An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.
  ☆26Updated 4 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆36Updated 2 years ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 5 months ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆27Updated 5 years ago