Alternatives and similar repositories for IMC_Brain

Users that are interested in IMC_Brain are comparing it to the libraries listed below

• walsh-quail-labs / IMC-Lung
  ☆20Updated 2 years ago
• Banovich-Lab / Spatial_PF
  ☆33Updated last month
• yunguan-wang / Spacia
  ☆30Updated 7 months ago
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆20Updated 4 years ago
• pekjoonwu / CELINA
  ☆16Updated last year
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• devsystemslab / snapseed
  ☆25Updated 8 months ago
• MarcElosua / SPOTlight_deconvolution_analysis
  ☆21Updated 3 years ago
• friedpine / scRNASeq_ESCC
  The code for processing single cell RNA-Seq dataset from ESCC cohorts
  ☆12Updated 4 years ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆44Updated 3 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 9 months ago
• TrigosTeam / SPIAT
  ☆25Updated 8 months ago
• LieberInstitute / VistoSeg
  Image processing pipeline for spatial projects
  ☆17Updated 2 years ago
• almaan / ST-mLiver
  Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…
  ☆20Updated 3 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆28Updated last year
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆53Updated 11 months ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆29Updated last year
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆35Updated 3 months ago
• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆14Updated 10 months ago
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆14Updated 4 months ago
• jbergenstrahle / STUtility
  ☆53Updated 2 years ago
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆26Updated 2 years ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 10 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 4 months ago
• Jonyyqn / scMalignantFinder
  scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…
  ☆15Updated 2 months ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 11 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆22Updated last year