TencentAILabHealthcare / pysodb
☆23Updated last year
Alternatives and similar repositories for pysodb:
Users that are interested in pysodb are comparing it to the libraries listed below
- ☆10Updated 2 years ago
- CAST package☆32Updated 5 months ago
- FISH Iterative Cell Typing☆11Updated last year
- Interactive applications of stlearn☆16Updated last year
- ☆42Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆23Updated 2 weeks ago
- ☆20Updated last month
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated 3 weeks ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆21Updated 3 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆46Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆20Updated 7 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆35Updated 11 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 weeks ago
- ☆45Updated 2 weeks ago
- ☆11Updated 6 years ago
- ☆15Updated 2 months ago
- ☆21Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆36Updated this week
- ☆13Updated 2 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆15Updated 3 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆12Updated 11 months ago
- ☆14Updated last week
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 8 months ago
- ☆13Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆20Updated last month