Alternatives and similar repositories for pysodb

Users that are interested in pysodb are comparing it to the libraries listed below

• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 7 months ago
• haotianteng / FICT
  FISH Iterative Cell Typing
  ☆11Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• LiHongCSBLab / SOAPy
  ☆29Updated 3 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆32Updated 2 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆23Updated 10 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated 11 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• prabhakarlab / Banksy_py
  ☆54Updated 6 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆14Updated last year
• dpeerlab / ENVI
  ☆48Updated last month
• raphael-group / paste_reproducibility
  ☆12Updated 2 years ago
• TencentAILabHealthcare / spatialID
  ☆39Updated 2 years ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 7 months ago
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆22Updated 2 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆27Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆20Updated 2 weeks ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆16Updated 2 years ago
• xzhoulab / SRTsim
  ☆14Updated 3 months ago
• bwalker1 / NeST
  ☆13Updated last year
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆24Updated last week
• marvinquiet / Cellcano
  Supervised cell type identification for scATAC-seq data
  ☆13Updated last year
• chenhcs / scResolve
  ☆13Updated 8 months ago
• theislab / ncem_tutorials
  ☆13Updated 2 years ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆12Updated 8 months ago
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated 3 months ago
• KlugerLab / SIMVI
  ☆13Updated last week