Alternatives and similar repositories for pysodb

Users that are interested in pysodb are comparing it to the libraries listed below

• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• haotianteng / FICT
  FISH Iterative Cell Typing
  ☆11Updated last year
• wanglab-broad / CAST
  CAST package
  ☆41Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆39Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 4 months ago
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆69Updated 3 weeks ago
• zcang / SpaOTsc
  ☆45Updated 4 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• xzhoulab / SRTsim
  ☆17Updated 8 months ago
• raphael-group / paste_reproducibility
  ☆13Updated 2 years ago
• theislab / scTab
  ☆61Updated last year
• dpeerlab / ENVI
  ☆50Updated last month
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆25Updated 7 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆33Updated 7 months ago
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆16Updated 3 years ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆41Updated 9 months ago
• shuxiaoc / maxfuse
  ☆56Updated last year
• JiangBioLab / DeepCCI
  ☆21Updated 3 years ago
• scverse / spatialdata-notebooks
  ☆62Updated last week
• marvinquiet / Cellcano
  Supervised cell type identification for scATAC-seq data
  ☆13Updated 2 years ago
• ElementoLab / utag
  ☆39Updated last year
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• jianhuupenn / MorphLink
  MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics
  ☆16Updated last month
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 7 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• walsh-quail-labs / IMC-Lung
  ☆20Updated 2 years ago
• CaiGroup / seqFISH-PLUS
  ☆53Updated 4 years ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆17Updated last year