Alternatives and similar repositories for pysodb

Users that are interested in pysodb are comparing it to the libraries listed below

• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated last year
• haotianteng / FICT
  FISH Iterative Cell Typing
  ☆11Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 3 months ago
• jianhuupenn / MorphLink
  MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics
  ☆16Updated 2 weeks ago
• xzhoulab / SRTsim
  ☆17Updated 7 months ago
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆16Updated 3 years ago
• LiHongCSBLab / SOAPy
  ☆31Updated 8 months ago
• feiyoung / PRECAST
  an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…
  ☆12Updated last month
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• prabhakarlab / Banksy_py
  ☆66Updated this week
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• chenhcs / scResolve
  ☆13Updated last year
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆17Updated last year
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆38Updated last year
• dpeerlab / ENVI
  ☆50Updated last month
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆18Updated 3 weeks ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• BiomedicalMachineLearning / Spacell
  ☆27Updated 5 years ago
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆26Updated 7 months ago
• JiangBioLab / DeepCCI
  ☆21Updated 3 years ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆63Updated 4 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 9 months ago
• walsh-quail-labs / IMC-Lung
  ☆20Updated 2 years ago
• hongleir / SpaceFlow
  ☆30Updated 2 years ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆33Updated 7 months ago
• coskunlab / scSpaMet
  ☆13Updated 2 years ago