Bayesian MCMC matrix factorization algorithm
☆73Jun 7, 2026Updated this week
Alternatives and similar repositories for CoGAPS
Users that are interested in CoGAPS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆65Mar 18, 2025Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Profile purification of single-cell spatial transcriptomics data☆46May 28, 2026Updated 2 weeks ago
- ☆30Mar 18, 2022Updated 4 years ago
- python API to the CoGAPS NMF package☆21May 19, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Methods to discover gene programs on single-cell data☆191Updated this week
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity (now archived). Pl…☆20May 13, 2026Updated 3 weeks ago
- ☆17Mar 18, 2025Updated last year
- This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.☆16Oct 29, 2025Updated 7 months ago
- Identifying external communication signals using single-cell transcriptomics data☆21Jun 10, 2024Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- R package to infer biological activities from omics data using a collection of methods.☆297Dec 16, 2025Updated 5 months ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22May 20, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Manifold learning to detect cell-cell interactions.☆59May 19, 2026Updated 3 weeks ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- RNA velocity estimation in R☆197Sep 14, 2023Updated 2 years ago
- ☆133Nov 17, 2023Updated 2 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆440Apr 11, 2026Updated 2 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 19, 2026Updated 3 weeks ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆30Sep 29, 2025Updated 8 months ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- Tool to create images and configuration files for Minerva-Story☆16Jun 1, 2026Updated last week
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 10 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆25Aug 28, 2025Updated 9 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆30Oct 4, 2021Updated 4 years ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆37Jun 12, 2020Updated 5 years ago
- CellRank: dynamics from multi-view single-cell data☆451Updated this week
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 6 months ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Oct 31, 2025Updated 7 months ago
- ☆21Sep 8, 2023Updated 2 years ago
- ☆15Apr 8, 2026Updated 2 months ago