kaishumason / NicheDELinks
NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
☆20Updated last month
Alternatives and similar repositories for NicheDE
Users that are interested in NicheDE are comparing it to the libraries listed below
Sorting:
- ☆55Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 8 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆55Updated 3 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆34Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 9 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆29Updated 2 months ago
- ☆29Updated 3 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆40Updated last month
- Implementation of MaSigPro for scRNA-Seq Data☆14Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆48Updated 9 months ago
- ☆41Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- ☆40Updated this week
- ☆37Updated 2 years ago
- ☆17Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆28Updated 2 weeks ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆14Updated 10 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 8 months ago
- ☆27Updated 4 months ago