seasoncloud / ClonalscopeLinks
Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalscope is able to detect subclones, label malignant cells, and trace subclones for both scRNA-seq and ST data.
☆14Updated 8 months ago
Alternatives and similar repositories for Clonalscope
Users that are interested in Clonalscope are comparing it to the libraries listed below
Sorting:
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 8 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆41Updated 4 years ago
- ☆31Updated 4 months ago
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 3 weeks ago
- scWGCNA☆60Updated 2 years ago
- ☆38Updated 8 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆41Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- ☆17Updated 10 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago