seasoncloud / ClonalscopeLinks
Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalscope is able to detect subclones, label malignant cells, and trace subclones for both scRNA-seq and ST data.
☆16Updated last year
Alternatives and similar repositories for Clonalscope
Users that are interested in Clonalscope are comparing it to the libraries listed below
Sorting:
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 3 months ago
- ☆27Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated this week
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated 4 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- A database of useful gene signatures for single-cell analysis☆27Updated 4 months ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 9 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 4 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 weeks ago
- ☆17Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- ☆56Updated 3 weeks ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆56Updated this week
- ☆43Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago