scverse / squidpy_notebooksLinks
Tutorials for Squidpy
β33Updated last week
Alternatives and similar repositories for squidpy_notebooks
Users that are interested in squidpy_notebooks are comparing it to the libraries listed below
Sorting:
- Analyzing cellular niches in spatial transcriptomics dataβ29Updated 6 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β52Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresβ23Updated last year
- Spatial direct messaging detected by bivariate Moranβ26Updated last month
- CAST packageβ40Updated 7 months ago
- β45Updated 2 years ago
- β53Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2β34Updated 3 months ago
- Template repository for creating novel models with scvi-toolsβ20Updated 2 years ago
- β21Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.β37Updated 6 months ago
- β58Updated 8 months ago
- β26Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlasesβ33Updated this week
- Reproducing all analyses and figures for the ASAP-seq paperβ29Updated 3 years ago
- Reproducing the experiments of the DestVI paperβ18Updated 3 years ago
- β48Updated 2 weeks ago
- Work with trained factor models in Pythonβ33Updated 7 months ago
- Multiview Intercellular SpaTial modeling frameworkβ56Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencingβ35Updated 3 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoringβ19Updated last year
- β25Updated 5 years ago
- Tutorials for multimodal omics data analysisβ15Updated 3 months ago
- Interactive applications of stlearnβ15Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genβ¦β40Updated 3 years ago
- β52Updated last year
- Regulatory networks with Direct Information in pythonβ40Updated 2 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)β29Updated 3 weeks ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolutionβ23Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics dataβ79Updated 2 months ago