scverse / squidpy_notebooksLinks
Tutorials for Squidpy
β34Updated last week
Alternatives and similar repositories for squidpy_notebooks
Users that are interested in squidpy_notebooks are comparing it to the libraries listed below
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β55Updated 3 months ago
- β61Updated last year
- CAST packageβ40Updated 11 months ago
- Spatial direct messaging detected by bivariate Moranβ28Updated 2 months ago
- Analyzing cellular niches in spatial transcriptomics dataβ30Updated 10 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seqβ22Updated 2 years ago
- β45Updated 2 months ago
- β55Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresβ22Updated 2 years ago
- β58Updated last week
- spatial transcriptome, single cellβ69Updated 2 years ago
- Reproducing the experiments of the DestVI paperβ19Updated 3 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many otheβ¦β53Updated 3 weeks ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligenceβ39Updated 3 years ago
- Spatial reconstruction of dissociated single-cell dataβ19Updated last year
- cTPnet Packageβ25Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genβ¦β40Updated 3 years ago
- β26Updated 4 months ago
- Multi-modal single cell analysis pipelinesβ58Updated 3 weeks ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)β30Updated 4 months ago
- Interactive applications of stlearnβ15Updated 2 years ago
- β15Updated 3 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics dataβ76Updated 8 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.β60Updated last month
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlasesβ34Updated last month
- Tutorials for multimodal omics data analysisβ17Updated 6 months ago
- β50Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2β38Updated 6 months ago
- Single Cell Consensus Clustering with Speedβ20Updated 2 years ago
- Notebooks used in scvi-tools tutorialsβ55Updated this week