vpc-ccg / sedefLinks
Identification of segmental duplications in the genome
☆27Updated 3 years ago
Alternatives and similar repositories for sedef
Users that are interested in sedef are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- ☆31Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- SV calling for diploid assemblies☆29Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆29Updated 5 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 3 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆33Updated this week
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆18Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- ☆36Updated 3 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated 2 weeks ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆43Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- ☆38Updated last month