Identification of segmental duplications in the genome
☆28Mar 1, 2022Updated 4 years ago
Alternatives and similar repositories for sedef
Users that are interested in sedef are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 18, 2023Updated 3 years ago
- Segmental duplication detection tool☆16Feb 7, 2023Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 8 months ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- Compute N50/NG50 and auN/auNG☆33Oct 7, 2023Updated 2 years ago
- ☆16Jun 30, 2022Updated 3 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆139Sep 16, 2022Updated 3 years ago
- ☆31Feb 14, 2026Updated last month
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- ☆49Mar 19, 2023Updated 3 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆65Mar 13, 2026Updated last week
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Aug 9, 2015Updated 10 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated 11 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 3 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Updated this week
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year