vpc-ccg / sedefLinks
Identification of segmental duplications in the genome
☆27Updated 3 years ago
Alternatives and similar repositories for sedef
Users that are interested in sedef are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ☆31Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- SV calling for diploid assemblies☆30Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Updated 2 years ago
- ☆38Updated 2 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- ☆19Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- ☆44Updated last year