vpc-ccg / sedefLinks
Identification of segmental duplications in the genome
☆27Updated 3 years ago
Alternatives and similar repositories for sedef
Users that are interested in sedef are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆31Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- SV calling for diploid assemblies☆28Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- ☆17Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- recompute GFA link overlaps☆26Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- ☆36Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated 3 weeks ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago