Alternatives and similar repositories for apps-scripts

Users that are interested in apps-scripts are comparing it to the libraries listed below

• mcfrith / tandem-genotypes
  ☆48Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆62Updated 5 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• kakitone / finishingTool
  finshingTool
  ☆54Updated 8 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆44Updated 5 months ago
• shilpagarg / DipAsm
  ☆77Updated 5 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• kjenike / panagram
  ☆66Updated 2 weeks ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• MeHelmy / princess
  ☆81Updated 6 months ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated last month
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated 10 months ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆64Updated 5 years ago
• SouthGreenPlatform / culebrONT
  A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
  ☆36Updated 5 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last month
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• univieCUBE / gepard
  Genome Pair Rapid Dotter
  ☆67Updated 4 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆39Updated 2 years ago
• mdcao / npScarf
  ☆26Updated 5 years ago
• arnederoeck / NanoSatellite
  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
  ☆32Updated 5 years ago
• thegenemyers / DASCRUBBER
  Alignment-based Scrubbing pipeline
  ☆21Updated last year
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆14Updated 7 months ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago